Non-Coding RNA Search

Ss1.1-Utr2-C0001803_M01.5

Sequence:


               
               CTGGTTTGAGGACGTCGTATGCCCCATCCAAAGGGTGGTTCTTCTCTTTCAGGAGAAGCT
TGCCTTTCTGCTACATGCTGCTCTGAGTTATACTCCTGTTGAAGTTAAAGAATCAGATGA
AAAAACAAAGAGAGACATTAACAGGTTTCTGAGTGTGGCCAGTCTCCAAGGCCTTATTCA
CGAAGGCACAGTGACATCTTGGTGCATGGCCATGACAGAGGAGCAGCATGAGTCTGTCAT
CATCGACTGCAGTGGTGCCCAGCCTCAGTTCCATAACGCAGGAAGCAACCGGTTTTGTGA
GGACTGGATGCATGCTTTTTTGAACGGTGCTGAAGGAGGTAACCCTTTTCTCTTTCGACA
AGTCCTGGAGAACTTTAAACTAAAGGCCATACAAGACACAAACAATTTGAAGAGATTTAT
CCGGCAGGCAGAAATGAATCATTACGCTTTGTTTAGATGTTTCATGTTCCTAAAGAACTG
TGGCAGTGGAGATATCCTTTTGAAGCTTGTCAAAGTGGAACATGAAGAAATGCCCGAAGC
CAAAAATGTGGTTGCCGTCCTCGAAGAATTTATGAAAGAAGCTCTTACCCAAAGTTTTTG
ATCACATATTTTGAGAAGACTGTATTGTGAAGTTATGCAAGCCTTGATATTTGAACCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGTTTGAGGACGTCGTATGCCCCATCCAAAGGGTGGTTCTTCTCTTTCAGGAGAAGCT
TGCCTTTCTGCTACATGCTGCTCTGAGTTATACTCCTGTTGAAGTTAAAGAATCAGATGA
AAAAACAAAGAGAGACATTAACAGGTTTCTGAGTGTGGCCAGTCTCCAAGGCCTTATTCA
CGAAGGCACAGTGACATCTTGGTGCATGGCCATGACAGAGGAGCAGCATGAGTCTGTCAT
CATCGACTGCAGTGGTGCCCAGCCTCAGTTCCATAACGCAGGAAGCAACCGGTTTTGTGA
GGACTGGATGCATGCTTTTTTGAACGGTGCTGAAGGAGGTAACCCTTTTCTCTTTCGACA
AGTCCTGGAGAACTTTAAACTAAAGGCCATACAAGACACAAACAATTTGAAGAGATTTAT
CCGGCAGGCAGAAATGAATCATTACGCTTTGTTTAGATGTTTCATGTTCCTAAAGAACTG
TGGCAGTGGAGATATCCTTTTGAAGCTTGTCAAAGTGGAACATGAAGAAATGCCCGAAGC
CAAAAATGTGGTTGCCGTCCTCGAAGAATTTATGAAAGAAGCTCTTACCCAAAGTTTTTG
ATCACATATTTTGAGAAGACTGTATTGTGAAGTTATGCAAGCCTTGATATTTGAACCTGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|21104460|dbj|BAB93500.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21104460|dbj|BAB93500.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               424-543, + strand, RNAz p=0.74467

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               424-543, + strand, RNAz p=0.74467

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_022344, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_022344, +

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               142-282, gnl|bosTau2|chr19 (12491921-12491781)
               

               
               142-282, gnl|canFam2|chr9 (43945306-43945156)
               

               
               142-282, gnl|dasNov1|scaffold_6744 (12886-13036)
               

               
               142-282, gnl|echTel1|scaffold_297963 (4271-4116)
               

               
               142-282, gnl|fr1|chrUn (124099633-124099783)
               

               
               142-282, gnl|galGal2|chr18 (6530012-6530163)
               

               
               142-282, gnl|hg17|chr17 (27685594-27685744)
               

               
               142-282, gnl|Hg17|chr17 (27685740-27685600)
               

               
               142-282, gnl|loxAfr1|scaffold_24134 (31364-31514)
               

               
               142-282, gnl|mm7|chr11 (80449630-80449780)
               

               
               142-282, gnl|Mm7|chr11 (80449776-80449636)
               

               
               142-282, gnl|monDom2|scaffold_44 (11446099-11445949)
               

               
               142-282, gnl|oryCun1|scaffold_208012 (80161-80311)
               

               
               142-282, gnl|panTro1|chr19 (31178653-31178803)
               

               
               142-282, gnl|rheMac2|chr16 (27673173-27673323)
               

               
               142-282, gnl|rn3|chr10 (68604056-68604206)
               

               
               142-282, gnl|xenTro1|scaffold_2028 (791-941)
               


               
               384-659, gnl|bosTau2|chr19 (12489229-12488954)
               

               
               384-659, gnl|Hg17|chr17 (27683112-27682833)
               

               
               384-659, gnl|Mm7|chr11 (80445595-80445319)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               142-282, gnl|bosTau2|chr19 (12491921-12491781)
               

               
               142-282, gnl|canFam2|chr9 (43945306-43945156)
               

               
               142-282, gnl|dasNov1|scaffold_6744 (12886-13036)
               

               
               142-282, gnl|echTel1|scaffold_297963 (4271-4116)
               

               
               142-282, gnl|fr1|chrUn (124099633-124099783)
               

               
               142-282, gnl|galGal2|chr18 (6530012-6530163)
               

               
               142-282, gnl|hg17|chr17 (27685594-27685744)
               

               
               142-282, gnl|Hg17|chr17 (27685740-27685600)
               

               
               142-282, gnl|loxAfr1|scaffold_24134 (31364-31514)
               

               
               142-282, gnl|mm7|chr11 (80449630-80449780)
               

               
               142-282, gnl|Mm7|chr11 (80449776-80449636)
               

               
               142-282, gnl|monDom2|scaffold_44 (11446099-11445949)
               

               
               142-282, gnl|oryCun1|scaffold_208012 (80161-80311)
               

               
               142-282, gnl|panTro1|chr19 (31178653-31178803)
               

               
               142-282, gnl|rheMac2|chr16 (27673173-27673323)
               

               
               142-282, gnl|rn3|chr10 (68604056-68604206)
               

               
               142-282, gnl|xenTro1|scaffold_2028 (791-941)
               


               
               384-659, gnl|bosTau2|chr19 (12489229-12488954)
               

               
               384-659, gnl|Hg17|chr17 (27683112-27682833)
               

               
               384-659, gnl|Mm7|chr11 (80445595-80445319)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               med (0.116252)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)

	142-282, gnl\|bosTau2\|chr19 (12491921-12491781)
	142-282, gnl\|canFam2\|chr9 (43945306-43945156)
	142-282, gnl\|dasNov1\|scaffold_6744 (12886-13036)
	142-282, gnl\|echTel1\|scaffold_297963 (4271-4116)
	142-282, gnl\|fr1\|chrUn (124099633-124099783)
	142-282, gnl\|galGal2\|chr18 (6530012-6530163)
	142-282, gnl\|hg17\|chr17 (27685594-27685744)
	142-282, gnl\|Hg17\|chr17 (27685740-27685600)
	142-282, gnl\|loxAfr1\|scaffold_24134 (31364-31514)
	142-282, gnl\|mm7\|chr11 (80449630-80449780)
	142-282, gnl\|Mm7\|chr11 (80449776-80449636)
	142-282, gnl\|monDom2\|scaffold_44 (11446099-11445949)
	142-282, gnl\|oryCun1\|scaffold_208012 (80161-80311)
	142-282, gnl\|panTro1\|chr19 (31178653-31178803)
	142-282, gnl\|rheMac2\|chr16 (27673173-27673323)
	142-282, gnl\|rn3\|chr10 (68604056-68604206)
	142-282, gnl\|xenTro1\|scaffold_2028 (791-941)

	384-659, gnl\|bosTau2\|chr19 (12489229-12488954)
	384-659, gnl\|Hg17\|chr17 (27683112-27682833)
	384-659, gnl\|Mm7\|chr11 (80445595-80445319)