Non-Coding RNA Search

Ss1.1-Utr2-C0001805_N05.5

Sequence:


               
               AAAAGCCAGTGCCCAGGGATGGGTCTCCAAGGAGCTGGGGATTAGTGCCAGGCAGCTCTT
TGCCAGCCGTGCCCACTTCCCCACGGGCATCAGAACAAGCCAAAGCCTTCGTTGTATGTT
GACGATGCACTTTTATGAATGTAGTTTCTATCGCTGTTTTTTAGCCTTTTCACATCATGT
AATGTGAGGCCTTGTTAATTTATATCTCAGATCATATTTGATGGTTTTTATATATATCAA
TTCTAGACTGTTACAGGTGATGGACGCCTCAAGAGAGAAGAGAAAAGGAAAGCAGCTGGT
TTTGCAGGAATGTGTATTGCACGGTGCCAGTTGGGTCTGGGGCCCTCTGTTTCCATCTCT
TCCCCCAGGGGCCTCTGTCAGGCACCCCAAGCCGGGCCCTCTGAAGACAGTGAGCACGTG
CTCCTACCTCCACCTTGGCTCTTGCCCCAGGTGGGGACCGGCTCGACCAAAGCTGCCTGG
TGGCAGCTCGGCCTCTCCACAACCCCGTCCTAATGGCTGTAGCGCTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAGCCAGTGCCCAGGGATGGGTCTCCAAGGAGCTGGGGATTAGTGCCAGGCAGCTCTT
TGCCAGCCGTGCCCACTTCCCCACGGGCATCAGAACAAGCCAAAGCCTTCGTTGTATGTT
GACGATGCACTTTTATGAATGTAGTTTCTATCGCTGTTTTTTAGCCTTTTCACATCATGT
AATGTGAGGCCTTGTTAATTTATATCTCAGATCATATTTGATGGTTTTTATATATATCAA
TTCTAGACTGTTACAGGTGATGGACGCCTCAAGAGAGAAGAGAAAAGGAAAGCAGCTGGT
TTTGCAGGAATGTGTATTGCACGGTGCCAGTTGGGTCTGGGGCCCTCTGTTTCCATCTCT
TCCCCCAGGGGCCTCTGTCAGGCACCCCAAGCCGGGCCCTCTGAAGACAGTGAGCACGTG
CTCCTACCTCCACCTTGGCTCTTGCCCCAGGTGGGGACCGGCTCGACCAAAGCTGCCTGG
TGGCAGCTCGGCCTCTCCACAACCCCGTCCTAATGGCTGTAGCGCTCT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-117, - strand, RNAz p=0.698337
               

               
               346-528, - strand, RNAz p=0.998871

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-117, - strand, RNAz p=0.698337
               

               
               346-528, - strand, RNAz p=0.998871

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               470-551, - strand, RNAmicro p=0.94988

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               470-551, - strand, RNAmicro p=0.94988

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-528, gnl|bosTau2|chr19 (40396802-40397341)
               

               
               1-528, gnl|Hg17|chr17 (59126196-59126734)
               

               
               1-528, gnl|Mm7|chr11 (106264487-106265029)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-528, gnl|bosTau2|chr19 (40396802-40397341)
               

               
               1-528, gnl|Hg17|chr17 (59126196-59126734)
               

               
               1-528, gnl|Mm7|chr11 (106264487-106265029)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cga (0.279096)
               

               
               ute (0.132784)
               

               
               ebs (0.118301)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               ute (0.132784)
               

               
               ebs (0.118301)

	1-117, - strand, RNAz p=0.698337
	346-528, - strand, RNAz p=0.998871

	1-528, gnl\|bosTau2\|chr19 (40396802-40397341)
	1-528, gnl\|Hg17\|chr17 (59126196-59126734)
	1-528, gnl\|Mm7\|chr11 (106264487-106265029)