Non-Coding RNA Search

Ss1.1-Utr2-C0001807_P09.5

Sequence:


               
               TGCATTTTGATCTTATCCTGGGCTTCTCTCTCTACCCCAAGGAGAAGATTTGCTTTTTGG
AAGACTGCCTTTCTTTGCAGATATTCTAGAAGTGCCACTGTGATTTGCAAATGTTCTTAC
CAGGAATAAACAAATGTAGGTAATAAATGATGCTTAGCTCTCCTGCTAGCTGTACCTGAG
CTAAACAAGGAGTGTTTAGATTTAATTTCACATGGTACAATGCAGTAGCCTTTCATTGGT
GAGACAGAACAGTAGCTGCTTGTGTTAGTCTCTTAGACAAAACGTTAGTCTCTAGTCATT
CGTAGAGTCCTTTAGTTGCACTTTTCACAAATCATATTAAACTCCAAAGTAGACAGAAAC
CAAGGAGATGACACTATACTTCTTATTACCATTTTTTTAAAGAGGCAGCTTATAAAAATC
TAAGTGATTTGTGTACTATATTTTAAATGATTGAAGCAGGATTGGCCTTGGGAAAAAGAT
ACCACTAAGAAAATATTTGTATTCTTGTGCCAATTCCCTGGGTAGTATAAGGAAAACTAC
TTAAGTCCCATGAGAAAATTACTATAGTGACTGCTCATTCTTTTGACGACTGTCTTCCTG
GCACTGTTGAGGATCAGAACCTACTCACATTCCACTTTACAATCATGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCATTTTGATCTTATCCTGGGCTTCTCTCTCTACCCCAAGGAGAAGATTTGCTTTTTGG
AAGACTGCCTTTCTTTGCAGATATTCTAGAAGTGCCACTGTGATTTGCAAATGTTCTTAC
CAGGAATAAACAAATGTAGGTAATAAATGATGCTTAGCTCTCCTGCTAGCTGTACCTGAG
CTAAACAAGGAGTGTTTAGATTTAATTTCACATGGTACAATGCAGTAGCCTTTCATTGGT
GAGACAGAACAGTAGCTGCTTGTGTTAGTCTCTTAGACAAAACGTTAGTCTCTAGTCATT
CGTAGAGTCCTTTAGTTGCACTTTTCACAAATCATATTAAACTCCAAAGTAGACAGAAAC
CAAGGAGATGACACTATACTTCTTATTACCATTTTTTTAAAGAGGCAGCTTATAAAAATC
TAAGTGATTTGTGTACTATATTTTAAATGATTGAAGCAGGATTGGCCTTGGGAAAAAGAT
ACCACTAAGAAAATATTTGTATTCTTGTGCCAATTCCCTGGGTAGTATAAGGAAAACTAC
TTAAGTCCCATGAGAAAATTACTATAGTGACTGCTCATTCTTTTGACGACTGTCTTCCTG
GCACTGTTGAGGATCAGAACCTACTCACATTCCACTTTACAATCATGG

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

Help | Less info


               
               41-431, gnl|bosTau2|chr5 (16352634-16353014)
               

               
               41-431, gnl|Hg17|chr12 (53132911-53132501)
               

               
               41-431, gnl|Mm7|chr15 (103387522-103387191)
               


               
               451-639, gnl|bosTau2|chr5 (16353012-16353198)
               

               
               451-639, gnl|canFam2|chr27 (3879882-3879593)
               

               
               451-639, gnl|echTel1|scaffold_316571 (42059-42276)
               

               
               451-639, gnl|hg17|chr12 (53132246-53132526)
               

               
               451-639, gnl|Hg17|chr12 (53132503-53132325)
               

               
               451-639, gnl|monDom2|scaffold_355 (19337-19592)
               

               
               451-639, gnl|panTro1|chr10 (54399328-54399613)
               

               
               451-639, gnl|rheMac2|chr11 (51568201-51568485)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               41-431, gnl|bosTau2|chr5 (16352634-16353014)
               

               
               41-431, gnl|Hg17|chr12 (53132911-53132501)
               

               
               41-431, gnl|Mm7|chr15 (103387522-103387191)
               


               
               451-639, gnl|bosTau2|chr5 (16353012-16353198)
               

               
               451-639, gnl|canFam2|chr27 (3879882-3879593)
               

               
               451-639, gnl|echTel1|scaffold_316571 (42059-42276)
               

               
               451-639, gnl|hg17|chr12 (53132246-53132526)
               

               
               451-639, gnl|Hg17|chr12 (53132503-53132325)
               

               
               451-639, gnl|monDom2|scaffold_355 (19337-19592)
               

               
               451-639, gnl|panTro1|chr10 (54399328-54399613)
               

               
               451-639, gnl|rheMac2|chr11 (51568201-51568485)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               tes (0.207814)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	41-431, gnl\|bosTau2\|chr5 (16352634-16353014)
	41-431, gnl\|Hg17\|chr12 (53132911-53132501)
	41-431, gnl\|Mm7\|chr15 (103387522-103387191)

	451-639, gnl\|bosTau2\|chr5 (16353012-16353198)
	451-639, gnl\|canFam2\|chr27 (3879882-3879593)
	451-639, gnl\|echTel1\|scaffold_316571 (42059-42276)
	451-639, gnl\|hg17\|chr12 (53132246-53132526)
	451-639, gnl\|Hg17\|chr12 (53132503-53132325)
	451-639, gnl\|monDom2\|scaffold_355 (19337-19592)
	451-639, gnl\|panTro1\|chr10 (54399328-54399613)
	451-639, gnl\|rheMac2\|chr11 (51568201-51568485)