Non-Coding RNA Search

Ss1.1-Utr2-C0001808_E04.5

Sequence:


               
               CTGCTGCTGCCACCTCAGGCCTGCGGAGGAGCCCCCACCCCTGGAGGCTGCTGGCCCCAA
CTTTGATTTCCTGACTGTTCCCTGGCTGCAGTCAGGGTTCACATTTCCAAACTCTCATCC
TCTGGGCACTGGGCAGTTGGAGGCTGAGCGCCCCCTCCGGACACTGCAGCCTTCTGGAGG
CTGCTATCCTGCCCGTGGGAGCCAGGGCAGCATCCTTATTCCCGTAGTTATTATTCTTCT
CTGTAGCAGAGCCTCCCTTCTGTTGTAGACTGGAGTTCAGCTGTCCCAGATGCCAGGCCC
TCAGCGGGTTCGGAAAGGTGACAAGAGCTGCCTCAGCCCTGGAAGCTGGAGGCACAGATG
TCTGCAGTGACTGGAGAGTGTCCTGGGGGAGCCAAGTTCCTTCCGTAAACACAGCTCAGT
TCTTAGCAACAAACTGTTTGTTTTTCTACTTGCTCCACCCTCAGCCCAGGCTGACCTCGG
CCTCCGACGGATAGACAGTGGGTCTACTTGTCATGGCTTGGTCAGAGTCAGTGAACCTTG
ACTTTGACTGGATGGCCTGGTCTTTGGGGGAGGGGAATGGCCTTCAGGGAGTAGCTCTTA
GCAGAAAGACTCCATAAGGCCATGGACAGTTACGTGGGACTTCTTTCTGCTGTGAAGACT
CTCAGAATCTCTTAGGGTTTTCCCCTGAGTTGCAGTGCAAGATACACCTTGGTCTTCTGA
CTCAGAGCCTGAAAGCTGTTTTCATTGGGTTCCATCAATCTCAGCGAAACTGTCACGGTA
TTTATTTTGCTAAATTATTGGTGTTTTTGCTTACAACTCACGACTGATTTAATACCAGAG
TTCTACAGCCTTCTCTCGCGGTGTTTGGACTTGCTCGACACAGGGAAAGACTGTTCCCAC
TGGTCCATTTGAGAATGACATTGTTATAAATCTTTTTTCTCTCTTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCTGCTGCCACCTCAGGCCTGCGGAGGAGCCCCCACCCCTGGAGGCTGCTGGCCCCAA
CTTTGATTTCCTGACTGTTCCCTGGCTGCAGTCAGGGTTCACATTTCCAAACTCTCATCC
TCTGGGCACTGGGCAGTTGGAGGCTGAGCGCCCCCTCCGGACACTGCAGCCTTCTGGAGG
CTGCTATCCTGCCCGTGGGAGCCAGGGCAGCATCCTTATTCCCGTAGTTATTATTCTTCT
CTGTAGCAGAGCCTCCCTTCTGTTGTAGACTGGAGTTCAGCTGTCCCAGATGCCAGGCCC
TCAGCGGGTTCGGAAAGGTGACAAGAGCTGCCTCAGCCCTGGAAGCTGGAGGCACAGATG
TCTGCAGTGACTGGAGAGTGTCCTGGGGGAGCCAAGTTCCTTCCGTAAACACAGCTCAGT
TCTTAGCAACAAACTGTTTGTTTTTCTACTTGCTCCACCCTCAGCCCAGGCTGACCTCGG
CCTCCGACGGATAGACAGTGGGTCTACTTGTCATGGCTTGGTCAGAGTCAGTGAACCTTG
ACTTTGACTGGATGGCCTGGTCTTTGGGGGAGGGGAATGGCCTTCAGGGAGTAGCTCTTA
GCAGAAAGACTCCATAAGGCCATGGACAGTTACGTGGGACTTCTTTCTGCTGTGAAGACT
CTCAGAATCTCTTAGGGTTTTCCCCTGAGTTGCAGTGCAAGATACACCTTGGTCTTCTGA
CTCAGAGCCTGAAAGCTGTTTTCATTGGGTTCCATCAATCTCAGCGAAACTGTCACGGTA
TTTATTTTGCTAAATTATTGGTGTTTTTGCTTACAACTCACGACTGATTTAATACCAGAG
TTCTACAGCCTTCTCTCGCGGTGTTTGGACTTGCTCGACACAGGGAAAGACTGTTCCCAC
TGGTCCATTTGAGAATGACATTGTTATAAATCTTTTTTCTCTCTTTCT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               142-256, - strand, RNAz p=0.952792
               

               
               459-768, + strand, RNAz p=0.999274

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               142-256, - strand, RNAz p=0.952792
               

               
               459-768, + strand, RNAz p=0.999274

Similar Transcript(s): 1 entry(ies)

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Similar Transcript(s): 1 entry(ies)

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               499-768, 488236 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BM029852.1|), 
blast E-value=3e-38, identity=83.46%

Similar Transcript(s): 1 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               499-768, 488236 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BM029852.1|), 
blast E-value=3e-38, identity=83.46%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC002933, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC002933, +

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               5-358, gnl|bosTau2|chr3 (15246823-15247172)
               

               
               5-358, gnl|Hg17|chr1 (148367282-148367687)
               

               
               5-358, gnl|Mm7|chr3 (94488057-94487669)
               


               
               380-947, gnl|bosTau2|chr3 (15247157-15247731)
               

               
               380-947, gnl|canFam2|chr17 (63704989-63705647)
               

               
               380-947, gnl|dasNov1|scaffold_7715 (45994-45378)
               

               
               380-947, gnl|echTel1|scaffold_284399 (44323-43666)
               

               
               380-947, gnl|hg17|chr1 (148367388-148368054)
               

               
               380-947, gnl|Hg17|chr1 (148367672-148368247)
               

               
               380-947, gnl|loxAfr1|scaffold_43046 (675-55)
               

               
               380-947, gnl|mm7|chr3 (94487951-94487336)
               

               
               380-947, gnl|Mm7|chr3 (94487684-94487146)
               

               
               380-947, gnl|monDom2|scaffold_44 (4865902-4866649)
               

               
               380-947, gnl|panTro1|chr1 (130119384-130120050)
               

               
               380-947, gnl|rheMac2|chr1 (130019468-130020131)
               

               
               380-947, gnl|rn3|chr2 (189549969-189549360)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-358, gnl|bosTau2|chr3 (15246823-15247172)
               

               
               5-358, gnl|Hg17|chr1 (148367282-148367687)
               

               
               5-358, gnl|Mm7|chr3 (94488057-94487669)
               


               
               380-947, gnl|bosTau2|chr3 (15247157-15247731)
               

               
               380-947, gnl|canFam2|chr17 (63704989-63705647)
               

               
               380-947, gnl|dasNov1|scaffold_7715 (45994-45378)
               

               
               380-947, gnl|echTel1|scaffold_284399 (44323-43666)
               

               
               380-947, gnl|hg17|chr1 (148367388-148368054)
               

               
               380-947, gnl|Hg17|chr1 (148367672-148368247)
               

               
               380-947, gnl|loxAfr1|scaffold_43046 (675-55)
               

               
               380-947, gnl|mm7|chr3 (94487951-94487336)
               

               
               380-947, gnl|Mm7|chr3 (94487684-94487146)
               

               
               380-947, gnl|monDom2|scaffold_44 (4865902-4866649)
               

               
               380-947, gnl|panTro1|chr1 (130119384-130120050)
               

               
               380-947, gnl|rheMac2|chr1 (130019468-130020131)
               

               
               380-947, gnl|rn3|chr2 (189549969-189549360)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               nco (0.161734)
               

               
               ski (0.146735)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               cov (0.132153)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               ski (0.146735)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               cov (0.132153)

	142-256, - strand, RNAz p=0.952792
	459-768, + strand, RNAz p=0.999274

	5-358, gnl\|bosTau2\|chr3 (15246823-15247172)
	5-358, gnl\|Hg17\|chr1 (148367282-148367687)
	5-358, gnl\|Mm7\|chr3 (94488057-94487669)

	380-947, gnl\|bosTau2\|chr3 (15247157-15247731)
	380-947, gnl\|canFam2\|chr17 (63704989-63705647)
	380-947, gnl\|dasNov1\|scaffold_7715 (45994-45378)
	380-947, gnl\|echTel1\|scaffold_284399 (44323-43666)
	380-947, gnl\|hg17\|chr1 (148367388-148368054)
	380-947, gnl\|Hg17\|chr1 (148367672-148368247)
	380-947, gnl\|loxAfr1\|scaffold_43046 (675-55)
	380-947, gnl\|mm7\|chr3 (94487951-94487336)
	380-947, gnl\|Mm7\|chr3 (94487684-94487146)
	380-947, gnl\|monDom2\|scaffold_44 (4865902-4866649)
	380-947, gnl\|panTro1\|chr1 (130119384-130120050)
	380-947, gnl\|rheMac2\|chr1 (130019468-130020131)
	380-947, gnl\|rn3\|chr2 (189549969-189549360)

	nco (0.161734)
	ski (0.146735)
	pla (0.133672)
	ute (0.132784)
	cov (0.132153)