Ss1.1-Utr2-C0001808_E04.5
|
CTGCTGCTGCCACCTCAGGCCTGCGGAGGAGCCCCCACCCCTGGAGGCTGCTGGCCCCAA
CTTTGATTTCCTGACTGTTCCCTGGCTGCAGTCAGGGTTCACATTTCCAAACTCTCATCC
TCTGGGCACTGGGCAGTTGGAGGCTGAGCGCCCCCTCCGGACACTGCAGCCTTCTGGAGG
CTGCTATCCTGCCCGTGGGAGCCAGGGCAGCATCCTTATTCCCGTAGTTATTATTCTTCT
CTGTAGCAGAGCCTCCCTTCTGTTGTAGACTGGAGTTCAGCTGTCCCAGATGCCAGGCCC
TCAGCGGGTTCGGAAAGGTGACAAGAGCTGCCTCAGCCCTGGAAGCTGGAGGCACAGATG
TCTGCAGTGACTGGAGAGTGTCCTGGGGGAGCCAAGTTCCTTCCGTAAACACAGCTCAGT
TCTTAGCAACAAACTGTTTGTTTTTCTACTTGCTCCACCCTCAGCCCAGGCTGACCTCGG
CCTCCGACGGATAGACAGTGGGTCTACTTGTCATGGCTTGGTCAGAGTCAGTGAACCTTG
ACTTTGACTGGATGGCCTGGTCTTTGGGGGAGGGGAATGGCCTTCAGGGAGTAGCTCTTA
GCAGAAAGACTCCATAAGGCCATGGACAGTTACGTGGGACTTCTTTCTGCTGTGAAGACT
CTCAGAATCTCTTAGGGTTTTCCCCTGAGTTGCAGTGCAAGATACACCTTGGTCTTCTGA
CTCAGAGCCTGAAAGCTGTTTTCATTGGGTTCCATCAATCTCAGCGAAACTGTCACGGTA
TTTATTTTGCTAAATTATTGGTGTTTTTGCTTACAACTCACGACTGATTTAATACCAGAG
TTCTACAGCCTTCTCTCGCGGTGTTTGGACTTGCTCGACACAGGGAAAGACTGTTCCCAC
TGGTCCATTTGAGAATGACATTGTTATAAATCTTTTTTCTCTCTTTCT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTGCTGCTGCCACCTCAGGCCTGCGGAGGAGCCCCCACCCCTGGAGGCTGCTGGCCCCAA
CTTTGATTTCCTGACTGTTCCCTGGCTGCAGTCAGGGTTCACATTTCCAAACTCTCATCC
TCTGGGCACTGGGCAGTTGGAGGCTGAGCGCCCCCTCCGGACACTGCAGCCTTCTGGAGG
CTGCTATCCTGCCCGTGGGAGCCAGGGCAGCATCCTTATTCCCGTAGTTATTATTCTTCT
CTGTAGCAGAGCCTCCCTTCTGTTGTAGACTGGAGTTCAGCTGTCCCAGATGCCAGGCCC
TCAGCGGGTTCGGAAAGGTGACAAGAGCTGCCTCAGCCCTGGAAGCTGGAGGCACAGATG
TCTGCAGTGACTGGAGAGTGTCCTGGGGGAGCCAAGTTCCTTCCGTAAACACAGCTCAGT
TCTTAGCAACAAACTGTTTGTTTTTCTACTTGCTCCACCCTCAGCCCAGGCTGACCTCGG
CCTCCGACGGATAGACAGTGGGTCTACTTGTCATGGCTTGGTCAGAGTCAGTGAACCTTG
ACTTTGACTGGATGGCCTGGTCTTTGGGGGAGGGGAATGGCCTTCAGGGAGTAGCTCTTA
GCAGAAAGACTCCATAAGGCCATGGACAGTTACGTGGGACTTCTTTCTGCTGTGAAGACT
CTCAGAATCTCTTAGGGTTTTCCCCTGAGTTGCAGTGCAAGATACACCTTGGTCTTCTGA
CTCAGAGCCTGAAAGCTGTTTTCATTGGGTTCCATCAATCTCAGCGAAACTGTCACGGTA
TTTATTTTGCTAAATTATTGGTGTTTTTGCTTACAACTCACGACTGATTTAATACCAGAG
TTCTACAGCCTTCTCTCGCGGTGTTTGGACTTGCTCGACACAGGGAAAGACTGTTCCCAC
TGGTCCATTTGAGAATGACATTGTTATAAATCTTTTTTCTCTCTTTCT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
499-768, 488236 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BM029852.1|),
blast E-value=3e-38, identity=83.46% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
499-768, 488236 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BM029852.1|),
blast E-value=3e-38, identity=83.46% |
Human gene identifier and UTR site,
human gene reading direction
|
5-358, gnl|bosTau2|chr3 (15246823-15247172) |
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5-358, gnl|Hg17|chr1 (148367282-148367687) |
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5-358, gnl|Mm7|chr3 (94488057-94487669) |
| |
|
380-947, gnl|bosTau2|chr3 (15247157-15247731) |
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380-947, gnl|canFam2|chr17 (63704989-63705647) |
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380-947, gnl|dasNov1|scaffold_7715 (45994-45378) |
|
380-947, gnl|echTel1|scaffold_284399 (44323-43666) |
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380-947, gnl|hg17|chr1 (148367388-148368054) |
|
380-947, gnl|Hg17|chr1 (148367672-148368247) |
|
380-947, gnl|loxAfr1|scaffold_43046 (675-55) |
|
380-947, gnl|mm7|chr3 (94487951-94487336) |
|
380-947, gnl|Mm7|chr3 (94487684-94487146) |
|
380-947, gnl|monDom2|scaffold_44 (4865902-4866649) |
|
380-947, gnl|panTro1|chr1 (130119384-130120050) |
|
380-947, gnl|rheMac2|chr1 (130019468-130020131) |
|
380-947, gnl|rn3|chr2 (189549969-189549360) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
5-358, gnl|bosTau2|chr3 (15246823-15247172) |
|
5-358, gnl|Hg17|chr1 (148367282-148367687) |
|
5-358, gnl|Mm7|chr3 (94488057-94487669) |
| |
|
380-947, gnl|bosTau2|chr3 (15247157-15247731) |
|
380-947, gnl|canFam2|chr17 (63704989-63705647) |
|
380-947, gnl|dasNov1|scaffold_7715 (45994-45378) |
|
380-947, gnl|echTel1|scaffold_284399 (44323-43666) |
|
380-947, gnl|hg17|chr1 (148367388-148368054) |
|
380-947, gnl|Hg17|chr1 (148367672-148368247) |
|
380-947, gnl|loxAfr1|scaffold_43046 (675-55) |
|
380-947, gnl|mm7|chr3 (94487951-94487336) |
|
380-947, gnl|Mm7|chr3 (94487684-94487146) |
|
380-947, gnl|monDom2|scaffold_44 (4865902-4866649) |
|
380-947, gnl|panTro1|chr1 (130119384-130120050) |
|
380-947, gnl|rheMac2|chr1 (130019468-130020131) |
|
380-947, gnl|rn3|chr2 (189549969-189549360) |
|
nco (0.161734) |
|
ski (0.146735) |
|
pla (0.133672) |
|
ute (0.132784) |
|
cov (0.132153) |
|
nco (0.161734) |
|
ski (0.146735) |
|
pla (0.133672) |
|
ute (0.132784) |
|
cov (0.132153) |