Non-Coding RNA Search

Ss1.1-Utr2-C0001809_B12.5

Sequence:


               
               GGAGATTCAGCGATTGCAGGAGGACACAGATAAAGCCAACAAACATTCTTCTGTGCTTGA
ACGAGATAATCAAAGAATGGAAATACAAATAAAAGATCTTTCACAACAGATTAGAGTGCT
TTTGATGGAACTTGAAGAAGCAAGGGGTAACCATGTAATCCGTGATGAAGAAGTAAGTTC
TGCTGATATAAGTAGTTCATCGGAAGTAAGGATCACAGCATCTAGTATCTTACAGAAACA
TTGAAGAGCTTCAACAGCAAAATCAACGTCTCTTAGTGGCCCTGAGAGAACTTGGGGAAA
CTAGAGAAAGAGAAGAACAAGAAACAACTTCATCCAAAATCACTGAGCTTCAGCTCAAAC
TTGAGAGTGCCCTCACTGAATTGGAACAACTCCGTGAATCACGACAACATCAAATGCACC
TTGTTGATTCAATAGTTCGTCAGCGTGATATGTACCGTATCTTGTTGTCACAAACAACAG
GAGTTGTCATTCCTTTGCAAGCTTCAGGCTTAGAGGATATTTCTCTCGTGTCAACTCCAA
AACGTTCCAGTACATCACAGACTGTTTCCACTCCTGCTTCAGTACCTGTTATCGAGTCAG
CAGAGGCTATAGAAGCCAAGGCAGCCCTTAAACAGTTGCAGGAAATTTTTGAGAACTACA
AAAAAGAAAAGGCAGATAATGAAAAAATGCAGAATGAGCAGCTTGAGAAACTCCAGGAAC
AAGTCACAGATTTGAGATCACAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGATTCAGCGATTGCAGGAGGACACAGATAAAGCCAACAAACATTCTTCTGTGCTTGA
ACGAGATAATCAAAGAATGGAAATACAAATAAAAGATCTTTCACAACAGATTAGAGTGCT
TTTGATGGAACTTGAAGAAGCAAGGGGTAACCATGTAATCCGTGATGAAGAAGTAAGTTC
TGCTGATATAAGTAGTTCATCGGAAGTAAGGATCACAGCATCTAGTATCTTACAGAAACA
TTGAAGAGCTTCAACAGCAAAATCAACGTCTCTTAGTGGCCCTGAGAGAACTTGGGGAAA
CTAGAGAAAGAGAAGAACAAGAAACAACTTCATCCAAAATCACTGAGCTTCAGCTCAAAC
TTGAGAGTGCCCTCACTGAATTGGAACAACTCCGTGAATCACGACAACATCAAATGCACC
TTGTTGATTCAATAGTTCGTCAGCGTGATATGTACCGTATCTTGTTGTCACAAACAACAG
GAGTTGTCATTCCTTTGCAAGCTTCAGGCTTAGAGGATATTTCTCTCGTGTCAACTCCAA
AACGTTCCAGTACATCACAGACTGTTTCCACTCCTGCTTCAGTACCTGTTATCGAGTCAG
CAGAGGCTATAGAAGCCAAGGCAGCCCTTAAACAGTTGCAGGAAATTTTTGAGAACTACA
AAAAAGAAAAGGCAGATAATGAAAAAATGCAGAATGAGCAGCTTGAGAAACTCCAGGAAC
AAGTCACAGATTTGAGATCACAGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               219-337, - strand, RNAz p=0.719567

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               219-337, - strand, RNAz p=0.719567

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               108-337, gnl|bosTau2|chr16 (49015575-49015803)
               

               
               108-337, gnl|Hg17|chr1 (183058414-183058186)
               

               
               108-337, gnl|Mm7|chr1 (150338544-150338772)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               108-337, gnl|bosTau2|chr16 (49015575-49015803)
               

               
               108-337, gnl|Hg17|chr1 (183058414-183058186)
               

               
               108-337, gnl|Mm7|chr1 (150338544-150338772)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ova (0.129132)
               

               
               spc (0.113366)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.129132)
               

               
               spc (0.113366)

	108-337, gnl\|bosTau2\|chr16 (49015575-49015803)
	108-337, gnl\|Hg17\|chr1 (183058414-183058186)
	108-337, gnl\|Mm7\|chr1 (150338544-150338772)