Non-Coding RNA Search

Ss1.1-Utr2-C0001810_J21.5

Sequence:


               
               AGCAGGCTCCCCTGGAGGCTCTCTGGATTGTTGCAGAAATGTCCCACGGGAAAATGCCTC
TGGTGCTTTCTCTGGTTCTCATCCTCTGTGGCCTTTTTAATAGCATCTCCTGTGAAAAGC
AGCAAACCTCCCCAAAGACTATTACCCCAGTCTCATTCAAGAGAATTGCAGCTCTCTCCC
AGAAGATGGAAGCTAACTACAAGGCTTTTGCCCAAGAATTGTTCAAGACTCTGTTAATCG
AGGATCCCAGAAAGAATATGATCTTCTCCCCTGTGAGCATCTCCATTTCCCTGGCCACCC
TCTCCCTGGGGCTCAGATCCGCAACACGCACCAACGCCATTGACGTCCTGGAACGTGACC
TCAGAAACCTCCGAGTGTGGGACAAACACCAGGCTTTACAGCATCTTGTTGAGATGCTGC
ACGAGCTAGAAAAGAAGAAACAGCTAAAGCACAAGGATATTTTCTTTATCGATAGGAACA
AGAAGATGAACCAGATGTTTCTGAAGGAGATAGACAGGGTATATAAAGTGGACATCCAGA
TGATCGACTTTAAAGATAAAGAAAAAACTAAGAAGGCCATCAACCAATTTGTGGCTGACA
AAATAGATAAGAAAGCCAAAAACTTAATCACCCACCTGGACCCTCAGACCCTCCTATGTC
TTGTCAACTACGTTTTTTTCAAAGGCATTTTGGAAAGAGCTTTCCAAACCAACCTCACAA
AGAAGGAGGACTTCTTTGTGAATGAAAAGACCATAGTGCAGGTGGACATGATGAGGAAGA
CAGAACGAATGATTTACAGCCGGTCAGAGGAACTGCTGGCTACGATGGTTAAAATGCCTT
GCAAAGAAAACGCGTCCATAATTCTTGTCCTCCCTGACACAGGAAAATTTGACTTTGCTT
TAAAAGAGATGGCTGCTAAGAGAGCTAGACTTCAGAAAACCAATGACTTCAGATTGGTGC
ACTTAGTTGTGCCCAAGATCAAGATCACCTCCAAGATAGATTTAAAACATCTGCTTCCAA
AGATTGGCATCAATGACATATTCACTACCAAGGCCGTCACCTGGAACACCACCAGGACTT
CAACTATCCTGGAGGCCGTGCATCATGCTGTGATAGAGGTGAAGGAGGATGGCTTGACCA
AGAATGCAGCCAAGGACAAGGACTTTTGGAAGGTCCCCGTGGACAAGAAGGAGGTCCCCG
TGGTCGTGAAGTTTGACAGACCCTTCTTCCTGTTTGTAGAGGATGAGATAACTCGAAGAG
ACCTCTTCGTGGCCAAAGTCTTCAACCCCAAAACTGAGTAGAGGTGGGGCCAGGCTGTGC
TGAGCAGGAACTTTGGTCATGAATAAAATGAATATAATTCACCACCTGTGCATTAAAAGA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCAGGCTCCCCTGGAGGCTCTCTGGATTGTTGCAGAAATGTCCCACGGGAAAATGCCTC
TGGTGCTTTCTCTGGTTCTCATCCTCTGTGGCCTTTTTAATAGCATCTCCTGTGAAAAGC
AGCAAACCTCCCCAAAGACTATTACCCCAGTCTCATTCAAGAGAATTGCAGCTCTCTCCC
AGAAGATGGAAGCTAACTACAAGGCTTTTGCCCAAGAATTGTTCAAGACTCTGTTAATCG
AGGATCCCAGAAAGAATATGATCTTCTCCCCTGTGAGCATCTCCATTTCCCTGGCCACCC
TCTCCCTGGGGCTCAGATCCGCAACACGCACCAACGCCATTGACGTCCTGGAACGTGACC
TCAGAAACCTCCGAGTGTGGGACAAACACCAGGCTTTACAGCATCTTGTTGAGATGCTGC
ACGAGCTAGAAAAGAAGAAACAGCTAAAGCACAAGGATATTTTCTTTATCGATAGGAACA
AGAAGATGAACCAGATGTTTCTGAAGGAGATAGACAGGGTATATAAAGTGGACATCCAGA
TGATCGACTTTAAAGATAAAGAAAAAACTAAGAAGGCCATCAACCAATTTGTGGCTGACA
AAATAGATAAGAAAGCCAAAAACTTAATCACCCACCTGGACCCTCAGACCCTCCTATGTC
TTGTCAACTACGTTTTTTTCAAAGGCATTTTGGAAAGAGCTTTCCAAACCAACCTCACAA
AGAAGGAGGACTTCTTTGTGAATGAAAAGACCATAGTGCAGGTGGACATGATGAGGAAGA
CAGAACGAATGATTTACAGCCGGTCAGAGGAACTGCTGGCTACGATGGTTAAAATGCCTT
GCAAAGAAAACGCGTCCATAATTCTTGTCCTCCCTGACACAGGAAAATTTGACTTTGCTT
TAAAAGAGATGGCTGCTAAGAGAGCTAGACTTCAGAAAACCAATGACTTCAGATTGGTGC
ACTTAGTTGTGCCCAAGATCAAGATCACCTCCAAGATAGATTTAAAACATCTGCTTCCAA
AGATTGGCATCAATGACATATTCACTACCAAGGCCGTCACCTGGAACACCACCAGGACTT
CAACTATCCTGGAGGCCGTGCATCATGCTGTGATAGAGGTGAAGGAGGATGGCTTGACCA
AGAATGCAGCCAAGGACAAGGACTTTTGGAAGGTCCCCGTGGACAAGAAGGAGGTCCCCG
TGGTCGTGAAGTTTGACAGACCCTTCTTCCTGTTTGTAGAGGATGAGATAACTCGAAGAG
ACCTCTTCGTGGCCAAAGTCTTCAACCCCAAAACTGAGTAGAGGTGGGGCCAGGCTGTGC
TGAGCAGGAACTTTGGTCATGAATAAAATGAATATAATTCACCACCTGTGCATTAAAAGA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               UFAP2_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               UFAP2_PIG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               100-1287, - strand, RNAz p=0.997283
               

               
               460-619, + strand, RNAz p=0.897121

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               100-1287, - strand, RNAz p=0.997283
               

               
               460-619, + strand, RNAz p=0.897121

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               21-685, gnl|bosTau2|chr21 (39289731-39290386)
               


               
               1169-1373, gnl|bosTau2|chr21 (39298075-39298282)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               21-685, gnl|bosTau2|chr21 (39289731-39290386)
               


               
               1169-1373, gnl|bosTau2|chr21 (39298075-39298282)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ute (43.6861)
               

               
               cut (9.68564)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (43.6861)
               

               
               cut (9.68564)

	100-1287, - strand, RNAz p=0.997283
	460-619, + strand, RNAz p=0.897121

	21-685, gnl\|bosTau2\|chr21 (39289731-39290386)

	1169-1373, gnl\|bosTau2\|chr21 (39298075-39298282)