Non-Coding RNA Search

Ss1.1-Utr2-C0001811_N19.5

Sequence:


               
               TGCTCGCCCAGTCACCCCCAGGACGCCTTCTGCAACTCTGACATCGTGATCCGGGCCAAG
GTGGTGGGGAAGAAGCTGGTGAAGGAGGGGCCCTTTGGCACACTGGTCTACACCATCAAG
CAGATGAAGATGTACCGAGGCTTCACCAAGATGCCCCATGTGCAGTATATCCACACAGAA
GCTTCTGAAAGTCTCTGTGGCCTTAAGCTAGAAGTCAACAAGTACCAGTACCTGCTGACA
GGCCGTGTCTATGATGGCAAGATGTACACAGGATTGTGTAACTTTGTGGAGAGATGGGAC
CAGCTCACCCTCTCCCAGCGCAAGGGGCTGAACTATCGATATCATCTGGGTTGTAACTGC
AAGATTAAATCCTGCTACTACCTGCCTTGCTTTGTGACCTCCAAGAATGAGTGTCTCTGG
ACAGACATGCTCTCCAATTTCGGCTACCCGGGCTACCAGTCCAAACACTATGCCTGCATC
CGGCAGAAGGGTGGCTATTGCAGCTGGTACCGAGGATGGGCCCCCCCGGACAAAAGCATC
ATCAATGCCACAGACCCCTGAGCGCCAGACCCTGCCCCACCTCACTTCCCTCCCTTCCCA
CTGAGCTTCCCTTGGACACTAACTCTTCCCAGATGATGACAATGAAATTAGTGCCTGTTT
TCTCGCAAATTTAGCACTTCGAACACTTAAAGGAAAATCTGTGCTGTCATATGGAGTTTA
TTTGGAACCATCCTCCTGCCCCCCCCTTCCCCTTCTTTTTGGTTTTGACATCACCTGTTT
CTACCTGGGAATTTTTGGTGCCATGCCAGAAAGAATGAGGAATGTATACTCCTCTTCTTC
GTGATAATATAATCTATATTTTTTTAGGAAAACGAAAATTGAAAAACTGTCCCATTTGGG
CATTGTAATACTACTCCTCTTTCTTCTTCCCCAACTCACCATCTCCCAGGCCCTCCTCCC
TTTGCCCTTCTCTTCCCTCTTCCCCAGTACATAAAGGACACAGACAAGGAAGCTGCTGAA
AAGCCAACTATTTCAAATCAGTCAAGGGCAGCAAGCAGATAGACTCAAGGTACGCAGAAG
ATCTTATACACCAAGGAGATGCTACCGCAGGTCCCAGCCAGACTTTGGCTATCTGTGTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTCGCCCAGTCACCCCCAGGACGCCTTCTGCAACTCTGACATCGTGATCCGGGCCAAG
GTGGTGGGGAAGAAGCTGGTGAAGGAGGGGCCCTTTGGCACACTGGTCTACACCATCAAG
CAGATGAAGATGTACCGAGGCTTCACCAAGATGCCCCATGTGCAGTATATCCACACAGAA
GCTTCTGAAAGTCTCTGTGGCCTTAAGCTAGAAGTCAACAAGTACCAGTACCTGCTGACA
GGCCGTGTCTATGATGGCAAGATGTACACAGGATTGTGTAACTTTGTGGAGAGATGGGAC
CAGCTCACCCTCTCCCAGCGCAAGGGGCTGAACTATCGATATCATCTGGGTTGTAACTGC
AAGATTAAATCCTGCTACTACCTGCCTTGCTTTGTGACCTCCAAGAATGAGTGTCTCTGG
ACAGACATGCTCTCCAATTTCGGCTACCCGGGCTACCAGTCCAAACACTATGCCTGCATC
CGGCAGAAGGGTGGCTATTGCAGCTGGTACCGAGGATGGGCCCCCCCGGACAAAAGCATC
ATCAATGCCACAGACCCCTGAGCGCCAGACCCTGCCCCACCTCACTTCCCTCCCTTCCCA
CTGAGCTTCCCTTGGACACTAACTCTTCCCAGATGATGACAATGAAATTAGTGCCTGTTT
TCTCGCAAATTTAGCACTTCGAACACTTAAAGGAAAATCTGTGCTGTCATATGGAGTTTA
TTTGGAACCATCCTCCTGCCCCCCCCTTCCCCTTCTTTTTGGTTTTGACATCACCTGTTT
CTACCTGGGAATTTTTGGTGCCATGCCAGAAAGAATGAGGAATGTATACTCCTCTTCTTC
GTGATAATATAATCTATATTTTTTTAGGAAAACGAAAATTGAAAAACTGTCCCATTTGGG
CATTGTAATACTACTCCTCTTTCTTCTTCCCCAACTCACCATCTCCCAGGCCCTCCTCCC
TTTGCCCTTCTCTTCCCTCTTCCCCAGTACATAAAGGACACAGACAAGGAAGCTGCTGAA
AAGCCAACTATTTCAAATCAGTCAAGGGCAGCAAGCAGATAGACTCAAGGTACGCAGAAG
ATCTTATACACCAAGGAGATGCTACCGCAGGTCCCAGCCAGACTTTGGCTATCTGTGTCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|3982747|gb|AAC95006.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|3982747|gb|AAC95006.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               128-242, - strand, RNAz p=0.814266
               

               
               715-910, - strand, RNAz p=0.99775

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               128-242, - strand, RNAz p=0.814266
               

               
               715-910, - strand, RNAz p=0.99775

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               128-242, gnl|bosTau2|chr5 (43062727-43062613)
               

               
               128-242, gnl|canFam2|chr10 (33755480-33755341)
               

               
               128-242, gnl|dasNov1|scaffold_4254 (12863-13002)
               

               
               128-242, gnl|echTel1|scaffold_310151 (40003-39864)
               

               
               128-242, gnl|fr1|chrUn (73255322-73255188)
               

               
               128-242, gnl|galGal2|chr1 (49819525-49819382)
               

               
               128-242, gnl|hg17|chr22 (31577767-31577906)
               

               
               128-242, gnl|Hg17|chr22 (31577788-31577902)
               

               
               128-242, gnl|loxAfr1|scaffold_7571 (69210-69343)
               

               
               128-242, gnl|mm7|chr10 (85902123-85902260)
               

               
               128-242, gnl|Mm7|chr10 (85902142-85902256)
               

               
               128-242, gnl|monDom2|scaffold_34 (5331491-5331360)
               

               
               128-242, gnl|oryCun1|scaffold_202574 (44901-44781)
               

               
               128-242, gnl|panTro1|chr23 (31735496-31735635)
               

               
               128-242, gnl|rheMac2|chr10 (76779656-76779795)
               

               
               128-242, gnl|rn3|chr7 (19691044-19690907)
               

               
               128-242, gnl|tetNig1|chrUn_random (55145668-55145534)
               

               
               128-242, gnl|xenTro1|scaffold_332 (741099-740970)
               


               
               356-1140, gnl|bosTau2|chr5 (43060359-43059573)
               

               
               356-1140, gnl|Hg17|chr22 (31579714-31580489)
               

               
               356-1140, gnl|Mm7|chr10 (85903909-85904675)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               128-242, gnl|bosTau2|chr5 (43062727-43062613)
               

               
               128-242, gnl|canFam2|chr10 (33755480-33755341)
               

               
               128-242, gnl|dasNov1|scaffold_4254 (12863-13002)
               

               
               128-242, gnl|echTel1|scaffold_310151 (40003-39864)
               

               
               128-242, gnl|fr1|chrUn (73255322-73255188)
               

               
               128-242, gnl|galGal2|chr1 (49819525-49819382)
               

               
               128-242, gnl|hg17|chr22 (31577767-31577906)
               

               
               128-242, gnl|Hg17|chr22 (31577788-31577902)
               

               
               128-242, gnl|loxAfr1|scaffold_7571 (69210-69343)
               

               
               128-242, gnl|mm7|chr10 (85902123-85902260)
               

               
               128-242, gnl|Mm7|chr10 (85902142-85902256)
               

               
               128-242, gnl|monDom2|scaffold_34 (5331491-5331360)
               

               
               128-242, gnl|oryCun1|scaffold_202574 (44901-44781)
               

               
               128-242, gnl|panTro1|chr23 (31735496-31735635)
               

               
               128-242, gnl|rheMac2|chr10 (76779656-76779795)
               

               
               128-242, gnl|rn3|chr7 (19691044-19690907)
               

               
               128-242, gnl|tetNig1|chrUn_random (55145668-55145534)
               

               
               128-242, gnl|xenTro1|scaffold_332 (741099-740970)
               


               
               356-1140, gnl|bosTau2|chr5 (43060359-43059573)
               

               
               356-1140, gnl|Hg17|chr22 (31579714-31580489)
               

               
               356-1140, gnl|Mm7|chr10 (85903909-85904675)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jca (0.11396)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)

	128-242, - strand, RNAz p=0.814266
	715-910, - strand, RNAz p=0.99775

	128-242, gnl\|bosTau2\|chr5 (43062727-43062613)
	128-242, gnl\|canFam2\|chr10 (33755480-33755341)
	128-242, gnl\|dasNov1\|scaffold_4254 (12863-13002)
	128-242, gnl\|echTel1\|scaffold_310151 (40003-39864)
	128-242, gnl\|fr1\|chrUn (73255322-73255188)
	128-242, gnl\|galGal2\|chr1 (49819525-49819382)
	128-242, gnl\|hg17\|chr22 (31577767-31577906)
	128-242, gnl\|Hg17\|chr22 (31577788-31577902)
	128-242, gnl\|loxAfr1\|scaffold_7571 (69210-69343)
	128-242, gnl\|mm7\|chr10 (85902123-85902260)
	128-242, gnl\|Mm7\|chr10 (85902142-85902256)
	128-242, gnl\|monDom2\|scaffold_34 (5331491-5331360)
	128-242, gnl\|oryCun1\|scaffold_202574 (44901-44781)
	128-242, gnl\|panTro1\|chr23 (31735496-31735635)
	128-242, gnl\|rheMac2\|chr10 (76779656-76779795)
	128-242, gnl\|rn3\|chr7 (19691044-19690907)
	128-242, gnl\|tetNig1\|chrUn_random (55145668-55145534)
	128-242, gnl\|xenTro1\|scaffold_332 (741099-740970)

	356-1140, gnl\|bosTau2\|chr5 (43060359-43059573)
	356-1140, gnl\|Hg17\|chr22 (31579714-31580489)
	356-1140, gnl\|Mm7\|chr10 (85903909-85904675)