Non-Coding RNA Search

Ss1.1-Utr2-C0001815_H24.5

Sequence:


               
               GCCACTCCCAGTCTCCATTAGCAGTGCGAGTTGCCTCCCCATCACCACATCTGTCAGTGT
TGGCAACCTCATTCTGAAAACTCATGTTATGTCTGAAGATAAAAACGACTTTTTAAAACC
TGTTGCAAATGGGAAGATGGTTAACAGCTGAAAGGAGGTTCATCTTTCAAATTTGTGACC
ATACCATGGAAGCATTTACACTAGCTTTTTATATATATAATATATATTATATAATGTATA
TTTTTTTTAAAAAAAAGATATTACTGGGGGCATCCATTTCCTGTGGACTCTTTGATACTT
CAAGCCCTCTTGCATTAGCATTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCACTCCCAGTCTCCATTAGCAGTGCGAGTTGCCTCCCCATCACCACATCTGTCAGTGT
TGGCAACCTCATTCTGAAAACTCATGTTATGTCTGAAGATAAAAACGACTTTTTAAAACC
TGTTGCAAATGGGAAGATGGTTAACAGCTGAAAGGAGGTTCATCTTTCAAATTTGTGACC
ATACCATGGAAGCATTTACACTAGCTTTTTATATATATAATATATATTATATAATGTATA
TTTTTTTTAAAAAAAAGATATTACTGGGGGCATCCATTTCCTGTGGACTCTTTGATACTT
CAAGCCCTCTTGCATTAGCATTAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               121-324, + strand, RNAz p=0.909529

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-324, + strand, RNAz p=0.909529

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               121-324, BY798313 Homo sapiens eye Homo sapiens cDNA clone HE3372.seq 5', 
(dbj|BY798313.2|), blast E-value=7e-29, identity=100% 
               

               
               121-205, BX118343 Soares_pregnant_uterus_NbHPU Homo sapiens cDNA clone 
(emb|BX118343.1|), blast E-value=1e-36, identity=98.82% 
               

               
               121-324, AGENCOURT_6492950 NIH_MGC_85 Homo sapiens cDNA clone IMAGE 
(gb|BM804447.1|), blast E-value=7e-29, identity=100% 
               

               
               121-324, UI-E-CK1-agb-n-04-0-UI.s2 UI-E-CK1 Homo sapiens cDNA clone 
(gb|BU736730.1|), blast E-value=1e-24, identity=98.55% 
               

               
               121-205, K-EST0169263 L10ChoCK0 Homo sapiens cDNA clone L10ChoCK0-27-H03 5', 
(gb|CB121629.1|), blast E-value=1e-36, identity=98.82% 
               

               
               121-324, 17000599944683 GRN_PRENEU Homo sapiens cDNA 5', mRNA sequence 
(gb|CN372070.1|), blast E-value=7e-29, identity=100%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               121-324, BY798313 Homo sapiens eye Homo sapiens cDNA clone HE3372.seq 5', 
(dbj|BY798313.2|), blast E-value=7e-29, identity=100% 
               

               
               121-205, BX118343 Soares_pregnant_uterus_NbHPU Homo sapiens cDNA clone 
(emb|BX118343.1|), blast E-value=1e-36, identity=98.82% 
               

               
               121-324, AGENCOURT_6492950 NIH_MGC_85 Homo sapiens cDNA clone IMAGE 
(gb|BM804447.1|), blast E-value=7e-29, identity=100% 
               

               
               121-324, UI-E-CK1-agb-n-04-0-UI.s2 UI-E-CK1 Homo sapiens cDNA clone 
(gb|BU736730.1|), blast E-value=1e-24, identity=98.55% 
               

               
               121-205, K-EST0169263 L10ChoCK0 Homo sapiens cDNA clone L10ChoCK0-27-H03 5', 
(gb|CB121629.1|), blast E-value=1e-36, identity=98.82% 
               

               
               121-324, 17000599944683 GRN_PRENEU Homo sapiens cDNA 5', mRNA sequence 
(gb|CN372070.1|), blast E-value=7e-29, identity=100%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AL833177, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AL833177, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-324, gnl|bosTau2|chr11 (75320390-75320067)
               

               
               1-324, gnl|Hg17|chr9 (122691610-122691287)
               

               
               1-324, gnl|Mm7|chr2 (37382694-37382370)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-324, gnl|bosTau2|chr11 (75320390-75320067)
               

               
               1-324, gnl|Hg17|chr9 (122691610-122691287)
               

               
               1-324, gnl|Mm7|chr2 (37382694-37382370)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cmu (0.186393)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)

	121-324, BY798313 Homo sapiens eye Homo sapiens cDNA clone HE3372.seq 5', (dbj\|BY798313.2\|), blast E-value=7e-29, identity=100%
	121-205, BX118343 Soares_pregnant_uterus_NbHPU Homo sapiens cDNA clone (emb\|BX118343.1\|), blast E-value=1e-36, identity=98.82%
	121-324, AGENCOURT_6492950 NIH_MGC_85 Homo sapiens cDNA clone IMAGE (gb\|BM804447.1\|), blast E-value=7e-29, identity=100%
	121-324, UI-E-CK1-agb-n-04-0-UI.s2 UI-E-CK1 Homo sapiens cDNA clone (gb\|BU736730.1\|), blast E-value=1e-24, identity=98.55%
	121-205, K-EST0169263 L10ChoCK0 Homo sapiens cDNA clone L10ChoCK0-27-H03 5', (gb\|CB121629.1\|), blast E-value=1e-36, identity=98.82%
	121-324, 17000599944683 GRN_PRENEU Homo sapiens cDNA 5', mRNA sequence (gb\|CN372070.1\|), blast E-value=7e-29, identity=100%

	1-324, gnl\|bosTau2\|chr11 (75320390-75320067)
	1-324, gnl\|Hg17\|chr9 (122691610-122691287)
	1-324, gnl\|Mm7\|chr2 (37382694-37382370)