Non-Coding RNA Search

Ss1.1-gvo-UMC-pgvo2-006-d11.3S

Sequence:


               
               CCTGGCATTTGACAAATGTACAGCTTGTTCTTCCAAAGTTCTTGATCAATATGAACGGGA
AGGATTTAATTTCCTAGCAAAGGTGTTTAATTCTTCACATTCCTTCTTGGAGGACTTGAC
TGGTCTTACCTTGCTGCATCAAGAGACCCAGGCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGGCATTTGACAAATGTACAGCTTGTTCTTCCAAAGTTCTTGATCAATATGAACGGGA
AGGATTTAATTTCCTAGCAAAGGTGTTTAATTCTTCACATTCCTTCTTGGAGGACTTGAC
TGGTCTTACCTTGCTGCATCAAGAGACCCAGGCTGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47183170|emb|CAG14745.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47183170|emb|CAG14745.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               29-156, + strand, RNAz p=0.70234

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               29-156, + strand, RNAz p=0.70234

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               29-156, gnl|bosTau2|chr22 (41860016-41860143)
               

               
               29-156, gnl|canFam2|chr20 (10042548-10042380)
               

               
               29-156, gnl|danRer3|chrNA (49418676-49418831)
               

               
               29-156, gnl|dasNov1|scaffold_4459 (65488-65319)
               

               
               29-156, gnl|echTel1|scaffold_322362 (61780-61954)
               

               
               29-156, gnl|fr1|chrUn (31642890-31642729)
               

               
               29-156, gnl|galGal2|chr12 (4476013-4476181)
               

               
               29-156, gnl|hg17|chr3 (11443265-11443433)
               

               
               29-156, gnl|Hg17|chr3 (11443270-11443396)
               

               
               29-156, gnl|loxAfr1|scaffold_5207 (21350-21518)
               

               
               29-156, gnl|mm7|chr6 (114802558-114802723)
               

               
               29-156, gnl|Mm7|chr6 (114802563-114802689)
               

               
               29-156, gnl|monDom2|scaffold_5 (38796739-38796904)
               

               
               29-156, gnl|oryCun1|scaffold_207959 (228542-228374)
               

               
               29-156, gnl|panTro1|chr2 (11851627-11851795)
               

               
               29-156, gnl|rheMac2|chr2 (49606084-49605916)
               

               
               29-156, gnl|rn3|chr4 (151153287-151153449)
               

               
               29-156, gnl|tetNig1|chrUn_random (167972725-167972863)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               29-156, gnl|bosTau2|chr22 (41860016-41860143)
               

               
               29-156, gnl|canFam2|chr20 (10042548-10042380)
               

               
               29-156, gnl|danRer3|chrNA (49418676-49418831)
               

               
               29-156, gnl|dasNov1|scaffold_4459 (65488-65319)
               

               
               29-156, gnl|echTel1|scaffold_322362 (61780-61954)
               

               
               29-156, gnl|fr1|chrUn (31642890-31642729)
               

               
               29-156, gnl|galGal2|chr12 (4476013-4476181)
               

               
               29-156, gnl|hg17|chr3 (11443265-11443433)
               

               
               29-156, gnl|Hg17|chr3 (11443270-11443396)
               

               
               29-156, gnl|loxAfr1|scaffold_5207 (21350-21518)
               

               
               29-156, gnl|mm7|chr6 (114802558-114802723)
               

               
               29-156, gnl|Mm7|chr6 (114802563-114802689)
               

               
               29-156, gnl|monDom2|scaffold_5 (38796739-38796904)
               

               
               29-156, gnl|oryCun1|scaffold_207959 (228542-228374)
               

               
               29-156, gnl|panTro1|chr2 (11851627-11851795)
               

               
               29-156, gnl|rheMac2|chr2 (49606084-49605916)
               

               
               29-156, gnl|rn3|chr4 (151153287-151153449)
               

               
               29-156, gnl|tetNig1|chrUn_random (167972725-167972863)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	29-156, gnl\|bosTau2\|chr22 (41860016-41860143)
	29-156, gnl\|canFam2\|chr20 (10042548-10042380)
	29-156, gnl\|danRer3\|chrNA (49418676-49418831)
	29-156, gnl\|dasNov1\|scaffold_4459 (65488-65319)
	29-156, gnl\|echTel1\|scaffold_322362 (61780-61954)
	29-156, gnl\|fr1\|chrUn (31642890-31642729)
	29-156, gnl\|galGal2\|chr12 (4476013-4476181)
	29-156, gnl\|hg17\|chr3 (11443265-11443433)
	29-156, gnl\|Hg17\|chr3 (11443270-11443396)
	29-156, gnl\|loxAfr1\|scaffold_5207 (21350-21518)
	29-156, gnl\|mm7\|chr6 (114802558-114802723)
	29-156, gnl\|Mm7\|chr6 (114802563-114802689)
	29-156, gnl\|monDom2\|scaffold_5 (38796739-38796904)
	29-156, gnl\|oryCun1\|scaffold_207959 (228542-228374)
	29-156, gnl\|panTro1\|chr2 (11851627-11851795)
	29-156, gnl\|rheMac2\|chr2 (49606084-49605916)
	29-156, gnl\|rn3\|chr4 (151153287-151153449)
	29-156, gnl\|tetNig1\|chrUn_random (167972725-167972863)