Non-Coding RNA Search

Ss1.1-gvo-UMC-pgvo3-001-d03.3

Sequence:


               
               CAGAAGAGCATCTGGATGCCACAGGAACTGGATGCCTTCCAGCCATACCCTGTTGAGATT
GTGCCAGGCAAGATCTACTTGGGCAATTTCAGGCAAGCCTGCGACCCTAAAATTCAGAAG
GATTTGAAAATCAAAGCACATGTCAATGTCTCCATGGAGACAGGGCCATTTTTTGTGGGT
GATGCCGACAAGCTTCTGCACATCCCGATAGAAGATTCCCCGGAAGCCAACATTTCCCCA
TTTTTACGTCACCTCTGTCACTTCATTGAAATGCACCTTGAGCTTGGCTCTGTCGTCCTG
GTCTTTTCCACCATGGGCATCAGTCGCAGCTGCGCAGCCATCTTGGCCTACCTTATGCAC
CGGAACGGGCAGACCCTGAAGAGGTCCTGGACCTATGTCAAGAAGTGTAAAAACAACATG
CGTCCAAACCGGGCCTTGGTGGCTCAGCTGTCAGAGTGGGAGAAGGTCGTCCTTGGAGAC
GCTGTCACAGACATCCTGGATCCACTCTACTGATCTTCTCTGTGGCCCAACCTCTCTGTG
AACCTGGCTTGGGGGCTTTTTGTGGTTAGTGGGTCAGGGTGTATAACCAGGAATGAGAAG
GCTATTGCCACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAAGAGCATCTGGATGCCACAGGAACTGGATGCCTTCCAGCCATACCCTGTTGAGATT
GTGCCAGGCAAGATCTACTTGGGCAATTTCAGGCAAGCCTGCGACCCTAAAATTCAGAAG
GATTTGAAAATCAAAGCACATGTCAATGTCTCCATGGAGACAGGGCCATTTTTTGTGGGT
GATGCCGACAAGCTTCTGCACATCCCGATAGAAGATTCCCCGGAAGCCAACATTTCCCCA
TTTTTACGTCACCTCTGTCACTTCATTGAAATGCACCTTGAGCTTGGCTCTGTCGTCCTG
GTCTTTTCCACCATGGGCATCAGTCGCAGCTGCGCAGCCATCTTGGCCTACCTTATGCAC
CGGAACGGGCAGACCCTGAAGAGGTCCTGGACCTATGTCAAGAAGTGTAAAAACAACATG
CGTCCAAACCGGGCCTTGGTGGCTCAGCTGTCAGAGTGGGAGAAGGTCGTCCTTGGAGAC
GCTGTCACAGACATCCTGGATCCACTCTACTGATCTTCTCTGTGGCCCAACCTCTCTGTG
AACCTGGCTTGGGGGCTTTTTGTGGTTAGTGGGTCAGGGTGTATAACCAGGAATGAGAAG
GCTATTGCCACC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61843863|ref|XP_607025.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61843863|ref|XP_607025.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               53-170, - strand, RNAz p=0.658737

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               53-170, - strand, RNAz p=0.658737

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               19-170, gnl|bosTau2|chr25 (30816340-30816189)
               

               
               19-170, gnl|Hg17|chr7 (75279379-75279228)
               

               
               19-170, gnl|Mm7|chr5 (134728430-134728279)
               


               
               380-608, gnl|bosTau2|chr25 (31537984-31538214)
               

               
               380-608, gnl|Hg17|chr7 (75270570-75270326)
               

               
               380-608, gnl|Mm7|chr5 (134719180-134718942)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-170, gnl|bosTau2|chr25 (30816340-30816189)
               

               
               19-170, gnl|Hg17|chr7 (75279379-75279228)
               

               
               19-170, gnl|Mm7|chr5 (134728430-134728279)
               


               
               380-608, gnl|bosTau2|chr25 (31537984-31538214)
               

               
               380-608, gnl|Hg17|chr7 (75270570-75270326)
               

               
               380-608, gnl|Mm7|chr5 (134719180-134718942)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	19-170, gnl\|bosTau2\|chr25 (30816340-30816189)
	19-170, gnl\|Hg17\|chr7 (75279379-75279228)
	19-170, gnl\|Mm7\|chr5 (134728430-134728279)

	380-608, gnl\|bosTau2\|chr25 (31537984-31538214)
	380-608, gnl\|Hg17\|chr7 (75270570-75270326)
	380-608, gnl\|Mm7\|chr5 (134719180-134718942)