Non-Coding RNA Search

Ss1.1-gvo-UMC-pgvo4-006-h05.3

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTGTGTTTATTTATTTATCTATGCCAAACGTTTATTGGTGAA
ATAGTCCTGAAGATATAATACTACATATGGCGCTTTGATTTCACATAATATTTAAGAAAA
AAGACAAAACACATAGAATTAGACATATAATTCAAAGACCACGGTACAACCTTTATCTTT
TTTTTACTTCAGCAAACAAAAAATAATGTCAAATGACATGAAAAGTGGCAAGTCTTTCGA
CAATAAATAATAAATTACTTTATAATTTTTGCAATGCAAGAGCAAACAAAAAAAAAAAGT
TTCCTTTTTTTTTCCTCTTTATTTCCAGAGAAAGAGAAAACAGTCGTTTTAACCAATAAC
TATACACATCTTTGGGGGGAAAAAGTCCTTGGACAGACACAAGTCAAACACAATCCCGAG
ACGCTTGTGGCAAAATAGAGGTAACCTTGTTGCAATGCTTTATAAGTTGGTTTTTAAATC
GGAATTCAAAAACCTTTAAAGTCGCTTCCGACTTTTTGATAGAGGATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTGTGTTTATTTATTTATCTATGCCAAACGTTTATTGGTGAA
ATAGTCCTGAAGATATAATACTACATATGGCGCTTTGATTTCACATAATATTTAAGAAAA
AAGACAAAACACATAGAATTAGACATATAATTCAAAGACCACGGTACAACCTTTATCTTT
TTTTTACTTCAGCAAACAAAAAATAATGTCAAATGACATGAAAAGTGGCAAGTCTTTCGA
CAATAAATAATAAATTACTTTATAATTTTTGCAATGCAAGAGCAAACAAAAAAAAAAAGT
TTCCTTTTTTTTTCCTCTTTATTTCCAGAGAAAGAGAAAACAGTCGTTTTAACCAATAAC
TATACACATCTTTGGGGGGAAAAAGTCCTTGGACAGACACAAGTCAAACACAATCCCGAG
ACGCTTGTGGCAAAATAGAGGTAACCTTGTTGCAATGCTTTATAAGTTGGTTTTTAAATC
GGAATTCAAAAACCTTTAAAGTCGCTTCCGACTTTTTGATAGAGGATG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               173-407, - strand, RNAz p=0.772378
               

               
               410-528, + strand, RNAz p=0.517192

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               173-407, - strand, RNAz p=0.772378
               

               
               410-528, + strand, RNAz p=0.517192

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               39-184, - strand, RNAmicro p=0.953167

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               39-184, - strand, RNAmicro p=0.953167

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_002202, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_002202, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               19-528, gnl|bosTau2|chr20 (16321158-16320652)
               

               
               19-528, gnl|Hg17|chr5 (50726326-50725823)
               

               
               19-528, gnl|Mm7|chr13 (113508315-113508819)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-528, gnl|bosTau2|chr20 (16321158-16320652)
               

               
               19-528, gnl|Hg17|chr5 (50726326-50725823)
               

               
               19-528, gnl|Mm7|chr13 (113508315-113508819)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               rec (0.17307)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)

	173-407, - strand, RNAz p=0.772378
	410-528, + strand, RNAz p=0.517192

	19-528, gnl\|bosTau2\|chr20 (16321158-16320652)
	19-528, gnl\|Hg17\|chr5 (50726326-50725823)
	19-528, gnl\|Mm7\|chr13 (113508315-113508819)