Non-Coding RNA Search

Ss1.1-gvo-UMC-pgvo4-012-b03.3

Sequence:


               
               ATGTGACCTCTCTTGGAGACCTTCATGGTTTGCGAGTTCCCAGCCTTCGTGATGTCAGCT
AACCTTTTTTTATGGTGCATAGTAACCCCCCTAGAAATGCCAGTTAATGCCAGAACCTGT
TGTTAGATGCTACCATTGTGTAGTTGCATTCCATTTCACAGATAATAAGGAAAGAAACTC
AGAAGTGAAGTTACCCGCACAAAGTCATGTAGCTGATTATTCCCAAACCAGGTCTGACTC
CAGAGCCTGTGCTCCTAACGCTATGCTATATTGTCTCCTTCCTATTTATATTTTGAGTTT
TCATCTGTTCCCATTAGAGAATATCCTAGAGTGGTAAGTAGTAATTTGATGTAGATATGA
AGAAATAGATTCCAATTATGTGACACTTGTTTCAGACAAGCAGTAAGAGATTCTGCCTGA
ATGCATCAGGCCCTTTCCTGTGTCTGCTTGTGCTTAAGGATGGTGATGTTCATTCATTCT
TTTCATTTCACGCAAGGCCCTGCACCAGCTCTGTGGGAGATAGACACGTGGGATGTGGCC
CTGGCTGAGAAAAGGAAGCGTGCGTGGTGCTCCTTCGGTGTTAGGACAACCCAGCAGTTA
TCTTTGACTGTCGTGAACACTCATGATGAATGACTGGCTTTGCTGTTTAACATTAGTTTT
TGAGTCATTTTTGTGACCCTATAGTTTTGTTTGGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGTGACCTCTCTTGGAGACCTTCATGGTTTGCGAGTTCCCAGCCTTCGTGATGTCAGCT
AACCTTTTTTTATGGTGCATAGTAACCCCCCTAGAAATGCCAGTTAATGCCAGAACCTGT
TGTTAGATGCTACCATTGTGTAGTTGCATTCCATTTCACAGATAATAAGGAAAGAAACTC
AGAAGTGAAGTTACCCGCACAAAGTCATGTAGCTGATTATTCCCAAACCAGGTCTGACTC
CAGAGCCTGTGCTCCTAACGCTATGCTATATTGTCTCCTTCCTATTTATATTTTGAGTTT
TCATCTGTTCCCATTAGAGAATATCCTAGAGTGGTAAGTAGTAATTTGATGTAGATATGA
AGAAATAGATTCCAATTATGTGACACTTGTTTCAGACAAGCAGTAAGAGATTCTGCCTGA
ATGCATCAGGCCCTTTCCTGTGTCTGCTTGTGCTTAAGGATGGTGATGTTCATTCATTCT
TTTCATTTCACGCAAGGCCCTGCACCAGCTCTGTGGGAGATAGACACGTGGGATGTGGCC
CTGGCTGAGAAAAGGAAGCGTGCGTGGTGCTCCTTCGGTGTTAGGACAACCCAGCAGTTA
TCTTTGACTGTCGTGAACACTCATGATGAATGACTGGCTTTGCTGTTTAACATTAGTTTT
TGAGTCATTTTTGTGACCCTATAGTTTTGTTTGGGT

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-440, gnl|bosTau2|chr13 (59368597-59368174)
               

               
               1-440, gnl|canFam2|chr24 (39558244-39558507)
               

               
               1-440, gnl|echTel1|scaffold_317847 (4364-4630)
               

               
               1-440, gnl|hg17|chr20 (48145659-48145929)
               

               
               1-440, gnl|Hg17|chr20 (48146075-48145667)
               

               
               1-440, gnl|loxAfr1|scaffold_6799 (65500-65222)
               

               
               1-440, gnl|panTro1|chr21 (50847576-50847846)
               

               
               1-440, gnl|rheMac2|chr10 (14378619-14378349)
               

               
               1-440, gnl|rn3|chr3 (158660247-158660481)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-440, gnl|bosTau2|chr13 (59368597-59368174)
               

               
               1-440, gnl|canFam2|chr24 (39558244-39558507)
               

               
               1-440, gnl|echTel1|scaffold_317847 (4364-4630)
               

               
               1-440, gnl|hg17|chr20 (48145659-48145929)
               

               
               1-440, gnl|Hg17|chr20 (48146075-48145667)
               

               
               1-440, gnl|loxAfr1|scaffold_6799 (65500-65222)
               

               
               1-440, gnl|panTro1|chr21 (50847576-50847846)
               

               
               1-440, gnl|rheMac2|chr10 (14378619-14378349)
               

               
               1-440, gnl|rn3|chr3 (158660247-158660481)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hlv (0.139256)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.139256)

	1-440, gnl\|bosTau2\|chr13 (59368597-59368174)
	1-440, gnl\|canFam2\|chr24 (39558244-39558507)
	1-440, gnl\|echTel1\|scaffold_317847 (4364-4630)
	1-440, gnl\|hg17\|chr20 (48145659-48145929)
	1-440, gnl\|Hg17\|chr20 (48146075-48145667)
	1-440, gnl\|loxAfr1\|scaffold_6799 (65500-65222)
	1-440, gnl\|panTro1\|chr21 (50847576-50847846)
	1-440, gnl\|rheMac2\|chr10 (14378619-14378349)
	1-440, gnl\|rn3\|chr3 (158660247-158660481)