Non-Coding RNA Search

Ss1.1-gvo-UMC-pgvo6-002-f08.3

Sequence:


               
               AGAAACAGAAATTGACCTCCCTGCCATGTGTTTAATATTTCTCCTGCTTTTACTTTTTGT
CATTTTCTTGGTAACTGTAAGCCTTGAGGATGTTTGTGAAAGGTTTTATTTCCTGTTACG
TATACATAATTAAATGAAAATTCTTCAGAAAAAAAGTTTGAAAAACTGAATTGTGGTTCT
GAAACGAATTTGCCAGGTTTTTTTTTTTTTGTTTTTGCGTTTGTTTTTTTGTTTGTTTGT
TTGTTTTTGGCTTATGAAAGAAAGCTGTGATAGATTCTACATTTGCTTTCTGATGTTTTC
CTTTGCTCCAGCTCTCGCCGAGAAGTCAGCAGACCTGCATCTGTGCTCTGCCTGTAGCCC
CAGTGGGCTGCCCGTTAAAAAATTCCATCACAAATTTATTAGCAGGTCGGCGTGAGAAGG
CTTCCACTAGAACAGAGTGGAAGCAGTACCGTTGTTTCTTTGCTTTTCTTGCCAAGAGGT
GCTCGTTTTAAAAGTGTGTTCAATAAAACAAATTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAACAGAAATTGACCTCCCTGCCATGTGTTTAATATTTCTCCTGCTTTTACTTTTTGT
CATTTTCTTGGTAACTGTAAGCCTTGAGGATGTTTGTGAAAGGTTTTATTTCCTGTTACG
TATACATAATTAAATGAAAATTCTTCAGAAAAAAAGTTTGAAAAACTGAATTGTGGTTCT
GAAACGAATTTGCCAGGTTTTTTTTTTTTTGTTTTTGCGTTTGTTTTTTTGTTTGTTTGT
TTGTTTTTGGCTTATGAAAGAAAGCTGTGATAGATTCTACATTTGCTTTCTGATGTTTTC
CTTTGCTCCAGCTCTCGCCGAGAAGTCAGCAGACCTGCATCTGTGCTCTGCCTGTAGCCC
CAGTGGGCTGCCCGTTAAAAAATTCCATCACAAATTTATTAGCAGGTCGGCGTGAGAAGG
CTTCCACTAGAACAGAGTGGAAGCAGTACCGTTGTTTCTTTGCTTTTCTTGCCAAGAGGT
GCTCGTTTTAAAAGTGTGTTCAATAAAACAAATTCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               309-514, + strand, RNAz p=0.904339

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               309-514, + strand, RNAz p=0.904339

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC012165, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC012165, +

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-210, gnl|bosTau2|chr11 (35456740-35456948)
               

               
               1-210, gnl|canFam2|chr17 (41478247-41477696)
               

               
               1-210, gnl|dasNov1|scaffold_71736 (9668-9108)
               

               
               1-210, gnl|echTel1|scaffold_310473 (41744-41176)
               

               
               1-210, gnl|galGal2|chr4 (85748696-85749240)
               

               
               1-210, gnl|hg17|chr2 (86912194-86912750)
               

               
               1-210, gnl|Hg17|chr2 (86912491-86912689)
               

               
               1-210, gnl|loxAfr1|scaffold_6166 (60596-61152)
               

               
               1-210, gnl|mm7|chr6 (71411056-71410498)
               

               
               1-210, gnl|Mm7|chr6 (71410779-71410565)
               

               
               1-210, gnl|monDom2|scaffold_63 (1015500-1016053)
               

               
               1-210, gnl|oryCun1|scaffold_172507 (11670-12224)
               

               
               1-210, gnl|panTro1|chr12 (89790851-89791407)
               

               
               1-210, gnl|rheMac2|chr13 (88385472-88386027)
               

               
               1-210, gnl|rn3|chr4 (104848942-104848393)
               

               
               1-210, gnl|xenTro1|scaffold_149 (713918-714469)
               


               
               236-514, gnl|bosTau2|chr11 (35456937-35457216)
               

               
               236-514, gnl|Hg17|chr2 (86912683-86912975)
               

               
               236-514, gnl|Mm7|chr6 (71410576-71410302)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-210, gnl|bosTau2|chr11 (35456740-35456948)
               

               
               1-210, gnl|canFam2|chr17 (41478247-41477696)
               

               
               1-210, gnl|dasNov1|scaffold_71736 (9668-9108)
               

               
               1-210, gnl|echTel1|scaffold_310473 (41744-41176)
               

               
               1-210, gnl|galGal2|chr4 (85748696-85749240)
               

               
               1-210, gnl|hg17|chr2 (86912194-86912750)
               

               
               1-210, gnl|Hg17|chr2 (86912491-86912689)
               

               
               1-210, gnl|loxAfr1|scaffold_6166 (60596-61152)
               

               
               1-210, gnl|mm7|chr6 (71411056-71410498)
               

               
               1-210, gnl|Mm7|chr6 (71410779-71410565)
               

               
               1-210, gnl|monDom2|scaffold_63 (1015500-1016053)
               

               
               1-210, gnl|oryCun1|scaffold_172507 (11670-12224)
               

               
               1-210, gnl|panTro1|chr12 (89790851-89791407)
               

               
               1-210, gnl|rheMac2|chr13 (88385472-88386027)
               

               
               1-210, gnl|rn3|chr4 (104848942-104848393)
               

               
               1-210, gnl|xenTro1|scaffold_149 (713918-714469)
               


               
               236-514, gnl|bosTau2|chr11 (35456937-35457216)
               

               
               236-514, gnl|Hg17|chr2 (86912683-86912975)
               

               
               236-514, gnl|Mm7|chr6 (71410576-71410302)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cte (0.29274)
               

               
               sin (0.174948)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               sin (0.174948)

	1-210, gnl\|bosTau2\|chr11 (35456740-35456948)
	1-210, gnl\|canFam2\|chr17 (41478247-41477696)
	1-210, gnl\|dasNov1\|scaffold_71736 (9668-9108)
	1-210, gnl\|echTel1\|scaffold_310473 (41744-41176)
	1-210, gnl\|galGal2\|chr4 (85748696-85749240)
	1-210, gnl\|hg17\|chr2 (86912194-86912750)
	1-210, gnl\|Hg17\|chr2 (86912491-86912689)
	1-210, gnl\|loxAfr1\|scaffold_6166 (60596-61152)
	1-210, gnl\|mm7\|chr6 (71411056-71410498)
	1-210, gnl\|Mm7\|chr6 (71410779-71410565)
	1-210, gnl\|monDom2\|scaffold_63 (1015500-1016053)
	1-210, gnl\|oryCun1\|scaffold_172507 (11670-12224)
	1-210, gnl\|panTro1\|chr12 (89790851-89791407)
	1-210, gnl\|rheMac2\|chr13 (88385472-88386027)
	1-210, gnl\|rn3\|chr4 (104848942-104848393)
	1-210, gnl\|xenTro1\|scaffold_149 (713918-714469)

	236-514, gnl\|bosTau2\|chr11 (35456937-35457216)
	236-514, gnl\|Hg17\|chr2 (86912683-86912975)
	236-514, gnl\|Mm7\|chr6 (71410576-71410302)