Non-Coding RNA Search

Ss1.1-mA2-MI-P-A2-aaq-a-07-1-UM.s1.3

Sequence:


               
               GTTTTGCAGACACTAACAAACATGGCTATAAAAGCACATTTTGTAACACAAAAGCCTACG
TAGATCGTAGACATGTTTATAGCATCCTTAAGTGAGTAGTTAAACCAGCAGTCTGAATTC
TCTTAGTCCCCTGAGTGGTTAATTAAATATTTTCCTTATTCATTGCCCACAACTGTGGTT
TTCCCCCTCTATGCACCCTAGAAAAATTCCCAAGACTAGACTTAGGAGGACACAAGCCGG
TTATGTGGTAAAATAAGAGTGCCTTTTCTGTTGGATGTTCATTTTAGTGCCCTGCATTTC
CAGGGCATACCATGTTTAGAAACTTTTTTCTCTAAACGTAGGAATTACTAGGCACCACGA
TTTTGAAATACCAATTTCCATATCTTAAGCAGCTGTCAACTTGCCAATTCCCTTTGGGTC
TCCTTTACATTTTCTTATAATGTTTCCTTGTGTTTTGGGTTGCCCTCAAAAAGAGTTTTG
GGGGGGCATGACTTTTTAAATTGATAGAAATGCAACTGTACAGATTTTTGCCCCCTTGTA
TCTGTGAGCATGATCTCTATCAGGCTTGAAAAATCTGCTTTATCATTTTGTATATTTGAC
TATTTTGTATTCAACATTACTTGATTCCTTATGTGCATGGCGATGTATTAAAATGTGGGA
TTTCTAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTGCAGACACTAACAAACATGGCTATAAAAGCACATTTTGTAACACAAAAGCCTACG
TAGATCGTAGACATGTTTATAGCATCCTTAAGTGAGTAGTTAAACCAGCAGTCTGAATTC
TCTTAGTCCCCTGAGTGGTTAATTAAATATTTTCCTTATTCATTGCCCACAACTGTGGTT
TTCCCCCTCTATGCACCCTAGAAAAATTCCCAAGACTAGACTTAGGAGGACACAAGCCGG
TTATGTGGTAAAATAAGAGTGCCTTTTCTGTTGGATGTTCATTTTAGTGCCCTGCATTTC
CAGGGCATACCATGTTTAGAAACTTTTTTCTCTAAACGTAGGAATTACTAGGCACCACGA
TTTTGAAATACCAATTTCCATATCTTAAGCAGCTGTCAACTTGCCAATTCCCTTTGGGTC
TCCTTTACATTTTCTTATAATGTTTCCTTGTGTTTTGGGTTGCCCTCAAAAAGAGTTTTG
GGGGGGCATGACTTTTTAAATTGATAGAAATGCAACTGTACAGATTTTTGCCCCCTTGTA
TCTGTGAGCATGATCTCTATCAGGCTTGAAAAATCTGCTTTATCATTTTGTATATTTGAC
TATTTTGTATTCAACATTACTTGATTCCTTATGTGCATGGCGATGTATTAAAATGTGGGA
TTTCTAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               191-345, - strand, RNAz p=0.852788
               

               
               268-426, - strand, RNAz p=0.991879
               

               
               385-531, + strand, RNAz p=0.843408

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               191-345, - strand, RNAz p=0.852788
               

               
               268-426, - strand, RNAz p=0.991879
               

               
               385-531, + strand, RNAz p=0.843408

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               2-666, gnl|bosTau2|chr14 (27391649-27392331)
               

               
               2-666, gnl|canFam2|chr13 (20552934-20553402)
               

               
               2-666, gnl|galGal2|chr2 (133201690-133201238)
               

               
               2-666, gnl|hg17|chr8 (119270858-119271324)
               

               
               2-666, gnl|Hg17|chr8 (119271583-119270888)
               

               
               2-666, gnl|loxAfr1|scaffold_40348 (8563-8129)
               

               
               2-666, gnl|mm7|chr15 (53510595-53511068)
               

               
               2-666, gnl|Mm7|chr15 (53511459-53510625)
               

               
               2-666, gnl|monDom2|scaffold_3 (38226742-38226265)
               

               
               2-666, gnl|oryCun1|scaffold_199593 (33213-33663)
               

               
               2-666, gnl|panTro1|chr7 (122001829-122002295)
               

               
               2-666, gnl|rheMac2|chr8 (120745463-120745930)
               

               
               2-666, gnl|rn3|chr7 (89798932-89799395)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-666, gnl|bosTau2|chr14 (27391649-27392331)
               

               
               2-666, gnl|canFam2|chr13 (20552934-20553402)
               

               
               2-666, gnl|galGal2|chr2 (133201690-133201238)
               

               
               2-666, gnl|hg17|chr8 (119270858-119271324)
               

               
               2-666, gnl|Hg17|chr8 (119271583-119270888)
               

               
               2-666, gnl|loxAfr1|scaffold_40348 (8563-8129)
               

               
               2-666, gnl|mm7|chr15 (53510595-53511068)
               

               
               2-666, gnl|Mm7|chr15 (53511459-53510625)
               

               
               2-666, gnl|monDom2|scaffold_3 (38226742-38226265)
               

               
               2-666, gnl|oryCun1|scaffold_199593 (33213-33663)
               

               
               2-666, gnl|panTro1|chr7 (122001829-122002295)
               

               
               2-666, gnl|rheMac2|chr8 (120745463-120745930)
               

               
               2-666, gnl|rn3|chr7 (89798932-89799395)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               amn (0.417711)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               ebs (0.118301)

	191-345, - strand, RNAz p=0.852788
	268-426, - strand, RNAz p=0.991879
	385-531, + strand, RNAz p=0.843408

	2-666, gnl\|bosTau2\|chr14 (27391649-27392331)
	2-666, gnl\|canFam2\|chr13 (20552934-20553402)
	2-666, gnl\|galGal2\|chr2 (133201690-133201238)
	2-666, gnl\|hg17\|chr8 (119270858-119271324)
	2-666, gnl\|Hg17\|chr8 (119271583-119270888)
	2-666, gnl\|loxAfr1\|scaffold_40348 (8563-8129)
	2-666, gnl\|mm7\|chr15 (53510595-53511068)
	2-666, gnl\|Mm7\|chr15 (53511459-53510625)
	2-666, gnl\|monDom2\|scaffold_3 (38226742-38226265)
	2-666, gnl\|oryCun1\|scaffold_199593 (33213-33663)
	2-666, gnl\|panTro1\|chr7 (122001829-122002295)
	2-666, gnl\|rheMac2\|chr8 (120745463-120745930)
	2-666, gnl\|rn3\|chr7 (89798932-89799395)