Non-Coding RNA Search

Ss1.1-mA2-MI-P-A2-aar-g-11-1-UM.s1.3

Sequence:


               
               CAGTATCTATTAGCAGCCATATTGTCACCTCAGCACTGTGGACACCTCCCTGTGAAGAGA
CCCTTCCATTCCATCTAGTTTTTGGAAAAACCTTGTGGATAAGTGGCTGTTTTATCAGTA
AGCAGCCTTTTGTGGCTTAGTTATAAAAGGCTTTAGTAGCTCAAAAATACTCTTGATTTC
ACATTTCTACTCTAGATGGCAACATTGGACAGAAAATACAATGACATAACCGATTTGCAG
TGATTTCGGAACTGTGTTTGAAATGGACTGTTACAGACTGGAAGGTGTGAACAGCTTTGT
ATGTTTATGAAGGTTAAGGGAATTTAATACTTTTCCACAGATTCTTTTGTAAGGGGAAGA
GGGAAATGTACACTTTTTACAGCAGCAATATTTTGTATATTATGTTTATTTCATGTGGTG
AATATGCAAGGCAGTACACTACGCACTGGACAGAATCAGAAATTCTCCGTTCCTGGGGAT
CGGAGCATGGTGGATGCTTGATTGTGTTGGTCTCAGAATGGTGTTCTGTGCAGACGAAGT
GAGGGAGAAGACAAAGCACCATATGTCCACTGTTATGTTCTTTAGAGGAGATTCAGATCC
CTTTTATCTGTTAGATAATCAAGGGCACTGTGATACAGTTTTGAGTAAAACATTTTTTTA
AAGCTTTCCAGTTTTGTGGATTAAAACCTTTTTATAAATATCATTTATAATACAGTTTTA
AAATGTGAGGCAATAAGAATTACTTCATGTTGGATCTGAAGAATCTTGGTAACAGTTTCA
TGTAAATGAAGTGGTAATCCTTTCCTAAAATAGCAATAACTGAAAATGAAAGTGTTAATT
TTACTTTGTTTGAATAATCAGGGAACTTAGGAATATCAAAACATTTTATAAATGGTATCC
AAGAAGAGTCAACATTGATTCAGTAATTTTACTTTTTAACATTAGAAGGATAATTCGTTT
ATATGATAATGCAGGAGACTTACAAACGTTTATTTCAACTTTCTCTACTGGAAATAATGC
CATTTATAAGGAAACACTTTTAAGTTTTTCCCCTTTTTTGTTTAATATAACAGATGTTTA
AGAAAATGCTTATTGATGAGGTTTATTCTGATCTGTATTAAAAGCAGAGAGGTTGCATTT
CAGATCACTTTGTTATTAGGTTGGCATATTTAATCATATTTGAGACTGTCCTCTGCCTGA
TTGTTTTAGCTAATTTCAGGGATATTGCATTGGGCAGGAAATCATGCATTGAGAAGTGTA
TAACCACAATTATTTAAGCATAATCTGAAAACATCTAGCCTAAAGGTAAGTTGCTATTTT
CATCACAGTTGCCTATGCCCAGGGAATAAGAATATTCTTTATAATTGAATTGTTTTTTCC
CACTTCTAACTGGAAACAAAACAGAAGGGGTGCCATAAATTTGAATAAGCAAAACATACT
GTTTTCAACGTACTGTAATCAAAAGGAGAAATGTCAGTGTGTCTTTGTGTGTGTATGAAA
GAGAGTGTGTGTGTTTTAAGGTCAGAATAGGGTGTTTTTCAACATGGTCAGTAGAAAATG
GACATCGAGTTTGAGCAGATAAAGCATGGACAGCCTTATTGTGATTGAAATGCTTATAGG
TTCTGTGCCAACTTTCCACCACTGTGTACTTTGTTGCTATTTAAAACTGTATCAACTCTA
ACGGAAGAATAAATTATTTGTGATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGTATCTATTAGCAGCCATATTGTCACCTCAGCACTGTGGACACCTCCCTGTGAAGAGA
CCCTTCCATTCCATCTAGTTTTTGGAAAAACCTTGTGGATAAGTGGCTGTTTTATCAGTA
AGCAGCCTTTTGTGGCTTAGTTATAAAAGGCTTTAGTAGCTCAAAAATACTCTTGATTTC
ACATTTCTACTCTAGATGGCAACATTGGACAGAAAATACAATGACATAACCGATTTGCAG
TGATTTCGGAACTGTGTTTGAAATGGACTGTTACAGACTGGAAGGTGTGAACAGCTTTGT
ATGTTTATGAAGGTTAAGGGAATTTAATACTTTTCCACAGATTCTTTTGTAAGGGGAAGA
GGGAAATGTACACTTTTTACAGCAGCAATATTTTGTATATTATGTTTATTTCATGTGGTG
AATATGCAAGGCAGTACACTACGCACTGGACAGAATCAGAAATTCTCCGTTCCTGGGGAT
CGGAGCATGGTGGATGCTTGATTGTGTTGGTCTCAGAATGGTGTTCTGTGCAGACGAAGT
GAGGGAGAAGACAAAGCACCATATGTCCACTGTTATGTTCTTTAGAGGAGATTCAGATCC
CTTTTATCTGTTAGATAATCAAGGGCACTGTGATACAGTTTTGAGTAAAACATTTTTTTA
AAGCTTTCCAGTTTTGTGGATTAAAACCTTTTTATAAATATCATTTATAATACAGTTTTA
AAATGTGAGGCAATAAGAATTACTTCATGTTGGATCTGAAGAATCTTGGTAACAGTTTCA
TGTAAATGAAGTGGTAATCCTTTCCTAAAATAGCAATAACTGAAAATGAAAGTGTTAATT
TTACTTTGTTTGAATAATCAGGGAACTTAGGAATATCAAAACATTTTATAAATGGTATCC
AAGAAGAGTCAACATTGATTCAGTAATTTTACTTTTTAACATTAGAAGGATAATTCGTTT
ATATGATAATGCAGGAGACTTACAAACGTTTATTTCAACTTTCTCTACTGGAAATAATGC
CATTTATAAGGAAACACTTTTAAGTTTTTCCCCTTTTTTGTTTAATATAACAGATGTTTA
AGAAAATGCTTATTGATGAGGTTTATTCTGATCTGTATTAAAAGCAGAGAGGTTGCATTT
CAGATCACTTTGTTATTAGGTTGGCATATTTAATCATATTTGAGACTGTCCTCTGCCTGA
TTGTTTTAGCTAATTTCAGGGATATTGCATTGGGCAGGAAATCATGCATTGAGAAGTGTA
TAACCACAATTATTTAAGCATAATCTGAAAACATCTAGCCTAAAGGTAAGTTGCTATTTT
CATCACAGTTGCCTATGCCCAGGGAATAAGAATATTCTTTATAATTGAATTGTTTTTTCC
CACTTCTAACTGGAAACAAAACAGAAGGGGTGCCATAAATTTGAATAAGCAAAACATACT
GTTTTCAACGTACTGTAATCAAAAGGAGAAATGTCAGTGTGTCTTTGTGTGTGTATGAAA
GAGAGTGTGTGTGTTTTAAGGTCAGAATAGGGTGTTTTTCAACATGGTCAGTAGAAAATG
GACATCGAGTTTGAGCAGATAAAGCATGGACAGCCTTATTGTGATTGAAATGCTTATAGG
TTCTGTGCCAACTTTCCACCACTGTGTACTTTGTTGCTATTTAAAACTGTATCAACTCTA
ACGGAAGAATAAATTATTTGTGATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1352-1692, gnl|bosTau2|chr1 (24880272-24880596)
               

               
               1352-1692, gnl|Hg17|chr2 (158346521-158346867)
               

               
               1352-1692, gnl|Mm7|chr18 (14975163-14974835)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1352-1692, gnl|bosTau2|chr1 (24880272-24880596)
               

               
               1352-1692, gnl|Hg17|chr2 (158346521-158346867)
               

               
               1352-1692, gnl|Mm7|chr18 (14975163-14974835)

Expressed library(ies): 23 entry(ies)

More info

Expressed library(ies): 23 entry(ies)

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               liv (0.438853)
               

               
               spl (0.429553)
               

               
               amn (0.417711)
               

               
               ova (0.387397)
               

               
               thg (0.380373)
               

               
               rec (0.346141)
               

               
               spc (0.340097)
               

               
               fat (0.294855)
               

               
               pla (0.267344)
               

               
               lyg (0.266205)
               

               
               hea (0.204499)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               isp (0.150376)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.438853)
               

               
               spl (0.429553)
               

               
               amn (0.417711)
               

               
               ova (0.387397)
               

               
               thg (0.380373)
               

               
               rec (0.346141)
               

               
               spc (0.340097)
               

               
               fat (0.294855)
               

               
               pla (0.267344)
               

               
               lyg (0.266205)
               

               
               hea (0.204499)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               gul (0.177588)
               

               
               isp (0.150376)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	1352-1692, gnl\|bosTau2\|chr1 (24880272-24880596)
	1352-1692, gnl\|Hg17\|chr2 (158346521-158346867)
	1352-1692, gnl\|Mm7\|chr18 (14975163-14974835)

	liv (0.438853)
	spl (0.429553)
	amn (0.417711)
	ova (0.387397)
	thg (0.380373)
	rec (0.346141)
	spc (0.340097)
	fat (0.294855)
	pla (0.267344)
	lyg (0.266205)
	hea (0.204499)
	sag (0.182715)
	mgm (0.180343)
	gul (0.177588)
	isp (0.150376)
	kid (0.129735)
	sug (0.127291)
	tra (0.123092)
	pgl (0.118483)
	ecc (0.115035)
	jca (0.11396)
	cty (0.10408)
	ldo (0.0970026)