Ss1.1-mA2-MI-P-A2-aex-a-08-1-UM.s1.3
|
TCAGCTGGCATAAAAGGAGTGTGAAGTCTGCTGTTGTTAATGCCATTGTTAACAAAGCTT
TGAGAATAAAAGACTTCATACAAACGATGTAAACGTGCTTCCAAGTTCAAGGGAAATTTG
TACTTAGGAAAACATGAAAACTTAGACTTGCATAGCATAATGAACACAAATATCAACTGC
ATTATGGTTTTTCCTGTCCCATCCTGGTTTTTGAAAAGTCAGTTCTAAAGACACAATTGT
TAGTGTTTATGATGTTTTTATCATAAAATGTCAAAAAAAACCCTTTACATACATTATAAA
GGTAGCATAACCACAAGCAATTCCCCTCAACAATGCAGAGAAAGTAGTACTTAAATAAGT
GAGAATTTAAAAGAAAAATACATACTAGAAGTCAAATTTAGATCTGGTTTATGTGAAATG
CTTTCACACTGTACATAAGTGTTCAATTTACTTTCACAATGATCAAGAATACTGCCCATT
ACTGTCACAGTTTTCCAGATATTACATAATGAACTTGTAATGTAACATTTCTTTCTCGCT
TCCTACTGAATTGTGAGCTATTACTTGTTTAAAAACCACATCACTTTCTGTTGCCATGAT
TTTTTTTTTCCCAACAAAAAACCAAAGTGCATTGTACGCCCTTTGGCCAGTCTTGTATGT
GCCTTGATCCAACGCTACATGTATTCAGCTTTTAAAACTCGACAAATTTTTCATACTTCC
TTAAATATGAAAAATTGTGGTCTTATTGCTGAATAAAACAAACAAAAAAAAGTATAAAAT
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TCAGCTGGCATAAAAGGAGTGTGAAGTCTGCTGTTGTTAATGCCATTGTTAACAAAGCTT
TGAGAATAAAAGACTTCATACAAACGATGTAAACGTGCTTCCAAGTTCAAGGGAAATTTG
TACTTAGGAAAACATGAAAACTTAGACTTGCATAGCATAATGAACACAAATATCAACTGC
ATTATGGTTTTTCCTGTCCCATCCTGGTTTTTGAAAAGTCAGTTCTAAAGACACAATTGT
TAGTGTTTATGATGTTTTTATCATAAAATGTCAAAAAAAACCCTTTACATACATTATAAA
GGTAGCATAACCACAAGCAATTCCCCTCAACAATGCAGAGAAAGTAGTACTTAAATAAGT
GAGAATTTAAAAGAAAAATACATACTAGAAGTCAAATTTAGATCTGGTTTATGTGAAATG
CTTTCACACTGTACATAAGTGTTCAATTTACTTTCACAATGATCAAGAATACTGCCCATT
ACTGTCACAGTTTTCCAGATATTACATAATGAACTTGTAATGTAACATTTCTTTCTCGCT
TCCTACTGAATTGTGAGCTATTACTTGTTTAAAAACCACATCACTTTCTGTTGCCATGAT
TTTTTTTTTCCCAACAAAAAACCAAAGTGCATTGTACGCCCTTTGGCCAGTCTTGTATGT
GCCTTGATCCAACGCTACATGTATTCAGCTTTTAAAACTCGACAAATTTTTCATACTTCC
TTAAATATGAAAAATTGTGGTCTTATTGCTGAATAAAACAAACAAAAAAAAGTATAAAAT
AAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
706-814, - strand, RNAmicro p=0.999797 |
|
713-786, + strand, RNAmicro p=0.993807 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
706-814, - strand, RNAmicro p=0.999797 |
|
713-786, + strand, RNAmicro p=0.993807 |
|
649-759, BP485250 Rattus norvegicus pancreatic islet Rattus norvegicus cDNA
(dbj|BP485250.1|), blast E-value=0, identity=97.3% |
|
649-759, CJ306216 RIKEN full-length enriched mouse cDNA library, Rathke's
(dbj|CJ306216.1|), blast E-value=0, identity=97.3% |
|
649-759, UI-R-A0-ag-f-01-0-UI.s1 UI-R-A0 Rattus norvegicus cDNA clone
(gb|AA817953.1|), blast E-value=0, identity=97.3% |
|
649-762, BE04009B1C07 BE04 Normalized and Subtracted bovine embryonic and
(gb|CN436418.1|), blast E-value=0, identity=100% |
|
649-759, RVL12281 Wackym-Soares normalized rat vestibular cDNA library
(gb|DV721146.1|), blast E-value=0, identity=97.3% |
|
649-759, RVL20653 Wackym-Soares normalized rat vestibular cDNA library
(gb|DV728050.1|), blast E-value=0, identity=97.3% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
649-759, BP485250 Rattus norvegicus pancreatic islet Rattus norvegicus cDNA
(dbj|BP485250.1|), blast E-value=0, identity=97.3% |
|
649-759, CJ306216 RIKEN full-length enriched mouse cDNA library, Rathke's
(dbj|CJ306216.1|), blast E-value=0, identity=97.3% |
|
649-759, UI-R-A0-ag-f-01-0-UI.s1 UI-R-A0 Rattus norvegicus cDNA clone
(gb|AA817953.1|), blast E-value=0, identity=97.3% |
|
649-762, BE04009B1C07 BE04 Normalized and Subtracted bovine embryonic and
(gb|CN436418.1|), blast E-value=0, identity=100% |
|
649-759, RVL12281 Wackym-Soares normalized rat vestibular cDNA library
(gb|DV721146.1|), blast E-value=0, identity=97.3% |
|
649-759, RVL20653 Wackym-Soares normalized rat vestibular cDNA library
(gb|DV728050.1|), blast E-value=0, identity=97.3% |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map