Non-Coding RNA Search

Ss1.1-mA2-MI-P-A2-aex-a-08-1-UM.s1.3

Sequence:


               
               TCAGCTGGCATAAAAGGAGTGTGAAGTCTGCTGTTGTTAATGCCATTGTTAACAAAGCTT
TGAGAATAAAAGACTTCATACAAACGATGTAAACGTGCTTCCAAGTTCAAGGGAAATTTG
TACTTAGGAAAACATGAAAACTTAGACTTGCATAGCATAATGAACACAAATATCAACTGC
ATTATGGTTTTTCCTGTCCCATCCTGGTTTTTGAAAAGTCAGTTCTAAAGACACAATTGT
TAGTGTTTATGATGTTTTTATCATAAAATGTCAAAAAAAACCCTTTACATACATTATAAA
GGTAGCATAACCACAAGCAATTCCCCTCAACAATGCAGAGAAAGTAGTACTTAAATAAGT
GAGAATTTAAAAGAAAAATACATACTAGAAGTCAAATTTAGATCTGGTTTATGTGAAATG
CTTTCACACTGTACATAAGTGTTCAATTTACTTTCACAATGATCAAGAATACTGCCCATT
ACTGTCACAGTTTTCCAGATATTACATAATGAACTTGTAATGTAACATTTCTTTCTCGCT
TCCTACTGAATTGTGAGCTATTACTTGTTTAAAAACCACATCACTTTCTGTTGCCATGAT
TTTTTTTTTCCCAACAAAAAACCAAAGTGCATTGTACGCCCTTTGGCCAGTCTTGTATGT
GCCTTGATCCAACGCTACATGTATTCAGCTTTTAAAACTCGACAAATTTTTCATACTTCC
TTAAATATGAAAAATTGTGGTCTTATTGCTGAATAAAACAAACAAAAAAAAGTATAAAAT
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAGCTGGCATAAAAGGAGTGTGAAGTCTGCTGTTGTTAATGCCATTGTTAACAAAGCTT
TGAGAATAAAAGACTTCATACAAACGATGTAAACGTGCTTCCAAGTTCAAGGGAAATTTG
TACTTAGGAAAACATGAAAACTTAGACTTGCATAGCATAATGAACACAAATATCAACTGC
ATTATGGTTTTTCCTGTCCCATCCTGGTTTTTGAAAAGTCAGTTCTAAAGACACAATTGT
TAGTGTTTATGATGTTTTTATCATAAAATGTCAAAAAAAACCCTTTACATACATTATAAA
GGTAGCATAACCACAAGCAATTCCCCTCAACAATGCAGAGAAAGTAGTACTTAAATAAGT
GAGAATTTAAAAGAAAAATACATACTAGAAGTCAAATTTAGATCTGGTTTATGTGAAATG
CTTTCACACTGTACATAAGTGTTCAATTTACTTTCACAATGATCAAGAATACTGCCCATT
ACTGTCACAGTTTTCCAGATATTACATAATGAACTTGTAATGTAACATTTCTTTCTCGCT
TCCTACTGAATTGTGAGCTATTACTTGTTTAAAAACCACATCACTTTCTGTTGCCATGAT
TTTTTTTTTCCCAACAAAAAACCAAAGTGCATTGTACGCCCTTTGGCCAGTCTTGTATGT
GCCTTGATCCAACGCTACATGTATTCAGCTTTTAAAACTCGACAAATTTTTCATACTTCC
TTAAATATGAAAAATTGTGGTCTTATTGCTGAATAAAACAAACAAAAAAAAGTATAAAAT
AAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-117, - strand, RNAz p=0.938388
               

               
               388-507, - strand, RNAz p=0.542088
               

               
               649-782, - strand, RNAz p=0.994365

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-117, - strand, RNAz p=0.938388
               

               
               388-507, - strand, RNAz p=0.542088
               

               
               649-782, - strand, RNAz p=0.994365

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               706-814, - strand, RNAmicro p=0.999797
               

               
               713-786, + strand, RNAmicro p=0.993807

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               706-814, - strand, RNAmicro p=0.999797
               

               
               713-786, + strand, RNAmicro p=0.993807

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               649-759, BP485250 Rattus norvegicus pancreatic islet Rattus norvegicus cDNA 
(dbj|BP485250.1|), blast E-value=0, identity=97.3% 
               

               
               649-759, CJ306216 RIKEN full-length enriched mouse cDNA library, Rathke's 
(dbj|CJ306216.1|), blast E-value=0, identity=97.3% 
               

               
               649-759, UI-R-A0-ag-f-01-0-UI.s1 UI-R-A0 Rattus norvegicus cDNA clone 
(gb|AA817953.1|), blast E-value=0, identity=97.3% 
               

               
               649-762, BE04009B1C07 BE04 Normalized and Subtracted bovine embryonic and 
(gb|CN436418.1|), blast E-value=0, identity=100% 
               

               
               649-759, RVL12281 Wackym-Soares normalized rat vestibular cDNA library 
(gb|DV721146.1|), blast E-value=0, identity=97.3% 
               

               
               649-759, RVL20653 Wackym-Soares normalized rat vestibular cDNA library 
(gb|DV728050.1|), blast E-value=0, identity=97.3%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               649-759, BP485250 Rattus norvegicus pancreatic islet Rattus norvegicus cDNA 
(dbj|BP485250.1|), blast E-value=0, identity=97.3% 
               

               
               649-759, CJ306216 RIKEN full-length enriched mouse cDNA library, Rathke's 
(dbj|CJ306216.1|), blast E-value=0, identity=97.3% 
               

               
               649-759, UI-R-A0-ag-f-01-0-UI.s1 UI-R-A0 Rattus norvegicus cDNA clone 
(gb|AA817953.1|), blast E-value=0, identity=97.3% 
               

               
               649-762, BE04009B1C07 BE04 Normalized and Subtracted bovine embryonic and 
(gb|CN436418.1|), blast E-value=0, identity=100% 
               

               
               649-759, RVL12281 Wackym-Soares normalized rat vestibular cDNA library 
(gb|DV721146.1|), blast E-value=0, identity=97.3% 
               

               
               649-759, RVL20653 Wackym-Soares normalized rat vestibular cDNA library 
(gb|DV728050.1|), blast E-value=0, identity=97.3%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-782, gnl|bosTau2|chr13 (3500980-3500207)
               

               
               1-782, gnl|Hg17|chr20 (14253547-14252770)
               

               
               1-782, gnl|Mm7|chr2 (140399958-140399192)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-782, gnl|bosTau2|chr13 (3500980-3500207)
               

               
               1-782, gnl|Hg17|chr20 (14253547-14252770)
               

               
               1-782, gnl|Mm7|chr2 (140399958-140399192)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lin (0.145603)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)

	1-117, - strand, RNAz p=0.938388
	388-507, - strand, RNAz p=0.542088
	649-782, - strand, RNAz p=0.994365

	706-814, - strand, RNAmicro p=0.999797
	713-786, + strand, RNAmicro p=0.993807

	649-759, BP485250 Rattus norvegicus pancreatic islet Rattus norvegicus cDNA (dbj\|BP485250.1\|), blast E-value=0, identity=97.3%
	649-759, CJ306216 RIKEN full-length enriched mouse cDNA library, Rathke's (dbj\|CJ306216.1\|), blast E-value=0, identity=97.3%
	649-759, UI-R-A0-ag-f-01-0-UI.s1 UI-R-A0 Rattus norvegicus cDNA clone (gb\|AA817953.1\|), blast E-value=0, identity=97.3%
	649-762, BE04009B1C07 BE04 Normalized and Subtracted bovine embryonic and (gb\|CN436418.1\|), blast E-value=0, identity=100%
	649-759, RVL12281 Wackym-Soares normalized rat vestibular cDNA library (gb\|DV721146.1\|), blast E-value=0, identity=97.3%
	649-759, RVL20653 Wackym-Soares normalized rat vestibular cDNA library (gb\|DV728050.1\|), blast E-value=0, identity=97.3%

	1-782, gnl\|bosTau2\|chr13 (3500980-3500207)
	1-782, gnl\|Hg17\|chr20 (14253547-14252770)
	1-782, gnl\|Mm7\|chr2 (140399958-140399192)