Non-Coding RNA Search

Ss1.1-mA2-MI-P-A2-aex-f-10-1-UM.s1.3

Sequence:


               
               GCCATTCAGGCTGTTGGTGTGATGTCATTTGCATTTATTTGCCACCATAACTGCTTCTTA
GTTTATGGTTCTTTGGAAGAACCCACAGTAACTAAGTGGTCCCACATCATCCATGTGTCC
ACATCGATTTCTGTATTTATCAGTATTCTCTTTGCTACATGTGGATACCTGACATTTACT
GGCTTCACCCAAGGAGACTTATTTGAAAATTATTGTAGAAATGATGACCTGGTGACATTT
GGAAGGTTTTGTTATGGCATCACTGTCATTTTGACATACCCGATTGAATGCTTTGTGACT
AGAGAGGTAATTGCCAATGTGTTTTTCAGTGGGAATCTTTCATCAGTTCTCCACATTATC
ATAACAGTGGCTATCATTACTGTAGCCACACTTGTGTCATTGCTGGTTGATTGCCTTGGA
ATAGTTTTAGAGCTCAATGGTGTGCTCTGCGCAGCTCCCCTAATTTTTATCATCCCATCA
GCCTGTTATCTGAAACTGTCTGAAGAACCAAGGACGCACTCAGATAAGATTATGTCCTGT
GTCATGCTTCCCATTGGTGCTGTGGTGATGGTTGTGGGATTCGTCATGGCCATTACAAAT
CCTCAAGACTGCACCCATGGGCAGGAAATGTTCTACTGCTTTTCTGACAATTTCTCCCTC
ACAAACATCTCAATTTCTCATTTTCAACTGACAACACAACTTTCAATTTTAAACATCAGT
ATCTTTCAATGAGTTGAACTGCTTTAAGAAATATGTATTTTTCATAGACTTCTAAACACA
TAACATTCATATGTTTTAATCTCTATATTATAAAAATTATCCCTTTGACATTTATCAAGA
CTTGGTTTTCTTTACTCTTTAGTACAGTATGAAAGATAAAAAGGAAAAGGAAATTGAATA
TATTATATCTTAAACGTGGGACAAAAGTAAATGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCATTCAGGCTGTTGGTGTGATGTCATTTGCATTTATTTGCCACCATAACTGCTTCTTA
GTTTATGGTTCTTTGGAAGAACCCACAGTAACTAAGTGGTCCCACATCATCCATGTGTCC
ACATCGATTTCTGTATTTATCAGTATTCTCTTTGCTACATGTGGATACCTGACATTTACT
GGCTTCACCCAAGGAGACTTATTTGAAAATTATTGTAGAAATGATGACCTGGTGACATTT
GGAAGGTTTTGTTATGGCATCACTGTCATTTTGACATACCCGATTGAATGCTTTGTGACT
AGAGAGGTAATTGCCAATGTGTTTTTCAGTGGGAATCTTTCATCAGTTCTCCACATTATC
ATAACAGTGGCTATCATTACTGTAGCCACACTTGTGTCATTGCTGGTTGATTGCCTTGGA
ATAGTTTTAGAGCTCAATGGTGTGCTCTGCGCAGCTCCCCTAATTTTTATCATCCCATCA
GCCTGTTATCTGAAACTGTCTGAAGAACCAAGGACGCACTCAGATAAGATTATGTCCTGT
GTCATGCTTCCCATTGGTGCTGTGGTGATGGTTGTGGGATTCGTCATGGCCATTACAAAT
CCTCAAGACTGCACCCATGGGCAGGAAATGTTCTACTGCTTTTCTGACAATTTCTCCCTC
ACAAACATCTCAATTTCTCATTTTCAACTGACAACACAACTTTCAATTTTAAACATCAGT
ATCTTTCAATGAGTTGAACTGCTTTAAGAAATATGTATTTTTCATAGACTTCTAAACACA
TAACATTCATATGTTTTAATCTCTATATTATAAAAATTATCCCTTTGACATTTATCAAGA
CTTGGTTTTCTTTACTCTTTAGTACAGTATGAAAGATAAAAAGGAAAAGGAAATTGAATA
TATTATATCTTAAACGTGGGACAAAAGTAAATGTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|59857709|gb|AAX08689.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|59857709|gb|AAX08689.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               70-189, + strand, RNAz p=0.717828
               

               
               543-662, + strand, RNAz p=0.664375

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               70-189, + strand, RNAz p=0.717828
               

               
               543-662, + strand, RNAz p=0.664375

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_173512, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_173512, +

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               31-194, gnl|bosTau2|chr2 (22845364-22845527)
               

               
               31-194, gnl|canFam2|chr36 (13144490-13144658)
               

               
               31-194, gnl|danRer3|chrUn (48378726-48378891)
               

               
               31-194, gnl|dasNov1|scaffold_20563 (18594-18443)
               

               
               31-194, gnl|echTel1|scaffold_162658 (230-398)
               

               
               31-194, gnl|fr1|chrUn (6907985-6908149)
               

               
               31-194, gnl|galGal2|chr7 (20803797-20803628)
               

               
               31-194, gnl|hg17|chr2 (165597122-165597291)
               

               
               31-194, gnl|Hg17|chr2 (165597291-165597128)
               

               
               31-194, gnl|loxAfr1|scaffold_57706 (9526-9357)
               

               
               31-194, gnl|mm7|chr2 (65265132-65265301)
               

               
               31-194, gnl|Mm7|chr2 (65265301-65265138)
               

               
               31-194, gnl|monDom2|scaffold_2 (61684346-61684511)
               

               
               31-194, gnl|oryCun1|scaffold_138725 (1540-1373)
               

               
               31-194, gnl|panTro1|chr13 (54990466-54990635)
               

               
               31-194, gnl|rheMac2|chr12 (28559082-28559251)
               

               
               31-194, gnl|rn3|chr3 (47176032-47176201)
               

               
               31-194, gnl|tetNig1|chr2 (11796478-11796315)
               


               
               424-936, gnl|bosTau2|chr2 (22863969-22864484)
               

               
               424-936, gnl|Hg17|chr2 (165580762-165580247)
               

               
               424-936, gnl|Mm7|chr2 (65247594-65247125)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               31-194, gnl|bosTau2|chr2 (22845364-22845527)
               

               
               31-194, gnl|canFam2|chr36 (13144490-13144658)
               

               
               31-194, gnl|danRer3|chrUn (48378726-48378891)
               

               
               31-194, gnl|dasNov1|scaffold_20563 (18594-18443)
               

               
               31-194, gnl|echTel1|scaffold_162658 (230-398)
               

               
               31-194, gnl|fr1|chrUn (6907985-6908149)
               

               
               31-194, gnl|galGal2|chr7 (20803797-20803628)
               

               
               31-194, gnl|hg17|chr2 (165597122-165597291)
               

               
               31-194, gnl|Hg17|chr2 (165597291-165597128)
               

               
               31-194, gnl|loxAfr1|scaffold_57706 (9526-9357)
               

               
               31-194, gnl|mm7|chr2 (65265132-65265301)
               

               
               31-194, gnl|Mm7|chr2 (65265301-65265138)
               

               
               31-194, gnl|monDom2|scaffold_2 (61684346-61684511)
               

               
               31-194, gnl|oryCun1|scaffold_138725 (1540-1373)
               

               
               31-194, gnl|panTro1|chr13 (54990466-54990635)
               

               
               31-194, gnl|rheMac2|chr12 (28559082-28559251)
               

               
               31-194, gnl|rn3|chr3 (47176032-47176201)
               

               
               31-194, gnl|tetNig1|chr2 (11796478-11796315)
               


               
               424-936, gnl|bosTau2|chr2 (22863969-22864484)
               

               
               424-936, gnl|Hg17|chr2 (165580762-165580247)
               

               
               424-936, gnl|Mm7|chr2 (65247594-65247125)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               rec (0.17307)
               

               
               ret (0.128733)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)
               

               
               ret (0.128733)

	70-189, + strand, RNAz p=0.717828
	543-662, + strand, RNAz p=0.664375

	31-194, gnl\|bosTau2\|chr2 (22845364-22845527)
	31-194, gnl\|canFam2\|chr36 (13144490-13144658)
	31-194, gnl\|danRer3\|chrUn (48378726-48378891)
	31-194, gnl\|dasNov1\|scaffold_20563 (18594-18443)
	31-194, gnl\|echTel1\|scaffold_162658 (230-398)
	31-194, gnl\|fr1\|chrUn (6907985-6908149)
	31-194, gnl\|galGal2\|chr7 (20803797-20803628)
	31-194, gnl\|hg17\|chr2 (165597122-165597291)
	31-194, gnl\|Hg17\|chr2 (165597291-165597128)
	31-194, gnl\|loxAfr1\|scaffold_57706 (9526-9357)
	31-194, gnl\|mm7\|chr2 (65265132-65265301)
	31-194, gnl\|Mm7\|chr2 (65265301-65265138)
	31-194, gnl\|monDom2\|scaffold_2 (61684346-61684511)
	31-194, gnl\|oryCun1\|scaffold_138725 (1540-1373)
	31-194, gnl\|panTro1\|chr13 (54990466-54990635)
	31-194, gnl\|rheMac2\|chr12 (28559082-28559251)
	31-194, gnl\|rn3\|chr3 (47176032-47176201)
	31-194, gnl\|tetNig1\|chr2 (11796478-11796315)

	424-936, gnl\|bosTau2\|chr2 (22863969-22864484)
	424-936, gnl\|Hg17\|chr2 (165580762-165580247)
	424-936, gnl\|Mm7\|chr2 (65247594-65247125)