Non-Coding RNA Search

Ss1.1-mA2-MI-P-A2-aey-c-07-1-UM.s1.3

Sequence:


               
               CAGTATTTCTTCTATAAGAACCTTGTTTCATTTTGCCACAGTTTTTGTACCAGTTCTTCT
GTGGATTTTCACAACAGCCACTGTATGATGCCGCTTACCTTACAATGTACAATATCTGCT
TCACATCCTTGCCCATCCTGGCCTACAGTCTGTTGGAACAGCACATCAACATTGACACTC
TGACCTCAGATCCCCGATTGTATATGAAAATTTCTGGCAATGCCATGCTACAGTTGGGCC
CCTTCTTATATTGGACATTTCTGGCTGCATTCGAAGGAACAGTGTTCTTCTTTGGGACTT
ATTTTCTTTTTCAGACTTCATCTTTAGAAGAAAATGCAAAGGTATATGGGAACTGGACTT
TTGGAACCATTGTTTTTACAGTCTTAGTATTCACTGTAACTCTGAAGCTCGCCTTGGATA
CTCGTTTCTGGACATGGATAAACCACTTTGTGATTTGGGGTTCTTTAGCCTTTTATGTGT
TTTTCTCATTCTTCTGGGGAGGAATTATATGGCCTTTTCTCAAACAACAGAGAATGTATT
TCGTATTTGCTCAAATGCTGTCCTCTGTATCCACATGGCTGGCCATAGTTCTTCTAATAT
TTATCAGCCTTTTCCCTGAGATTCTTCTGATAGTATTAAAGAATGTAAGAAGAAGAAGTG
CCAGGAGAAATCTGAGCTGTAAAAAGGCATCTGACTCATTATCCACCAGACCTTCAGTCA
GACCTCTTCTTTTACGAACATTCTCAGACGAATCTAATATATTGTAACAGAATCCGAATC
TTGAACTGCCTATGTTACTGTCCTACAAGCATATTGACAGTGGTTACAGCTAAAAGAGAA
AGCATGAAGAAACAACTACAAAAAGTTTTCATCTCAGGATACTCGATATGCAACAAACTA
AACCACTATCTTAAGTCTAAGGTTCAGAATAAATGTCCATTAAAATACCAAATGACTCTC
TTTAAGTATTTACAGTTATTGTAAGCAGCCGTTATGGCCAAAGCTCTAAGTTATGAATTA
TATGAAAGTTGAAAGCAAGATTATTTAGAATTTCTGGCTTTAGATAGAATAAAATAACTA
CCAAATGAGTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGTATTTCTTCTATAAGAACCTTGTTTCATTTTGCCACAGTTTTTGTACCAGTTCTTCT
GTGGATTTTCACAACAGCCACTGTATGATGCCGCTTACCTTACAATGTACAATATCTGCT
TCACATCCTTGCCCATCCTGGCCTACAGTCTGTTGGAACAGCACATCAACATTGACACTC
TGACCTCAGATCCCCGATTGTATATGAAAATTTCTGGCAATGCCATGCTACAGTTGGGCC
CCTTCTTATATTGGACATTTCTGGCTGCATTCGAAGGAACAGTGTTCTTCTTTGGGACTT
ATTTTCTTTTTCAGACTTCATCTTTAGAAGAAAATGCAAAGGTATATGGGAACTGGACTT
TTGGAACCATTGTTTTTACAGTCTTAGTATTCACTGTAACTCTGAAGCTCGCCTTGGATA
CTCGTTTCTGGACATGGATAAACCACTTTGTGATTTGGGGTTCTTTAGCCTTTTATGTGT
TTTTCTCATTCTTCTGGGGAGGAATTATATGGCCTTTTCTCAAACAACAGAGAATGTATT
TCGTATTTGCTCAAATGCTGTCCTCTGTATCCACATGGCTGGCCATAGTTCTTCTAATAT
TTATCAGCCTTTTCCCTGAGATTCTTCTGATAGTATTAAAGAATGTAAGAAGAAGAAGTG
CCAGGAGAAATCTGAGCTGTAAAAAGGCATCTGACTCATTATCCACCAGACCTTCAGTCA
GACCTCTTCTTTTACGAACATTCTCAGACGAATCTAATATATTGTAACAGAATCCGAATC
TTGAACTGCCTATGTTACTGTCCTACAAGCATATTGACAGTGGTTACAGCTAAAAGAGAA
AGCATGAAGAAACAACTACAAAAAGTTTTCATCTCAGGATACTCGATATGCAACAAACTA
AACCACTATCTTAAGTCTAAGGTTCAGAATAAATGTCCATTAAAATACCAAATGACTCTC
TTTAAGTATTTACAGTTATTGTAAGCAGCCGTTATGGCCAAAGCTCTAAGTTATGAATTA
TATGAAAGTTGAAAGCAAGATTATTTAGAATTTCTGGCTTTAGATAGAATAAAATAACTA
CCAAATGAGTGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57209098|emb|CAI41445.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57209098|emb|CAI41445.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               93-212, - strand, RNAz p=0.875767

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               93-212, - strand, RNAz p=0.875767

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               55-212, gnl|bosTau2|chrX (6733533-6733376)
               

               
               55-212, gnl|Hg17|chrX (138557856-138557697)
               

               
               55-212, gnl|Mm7|chrX (55726024-55725866)
               


               
               511-665, gnl|bosTau2|chrX (6719493-6719339)
               

               
               511-665, gnl|Hg17|chrX (138545749-138545595)
               

               
               511-665, gnl|Mm7|chrX (55717420-55717266)
               


               
               768-1072, gnl|bosTau2|chrX (6709972-6709669)
               

               
               768-1072, gnl|Hg17|chrX (138536644-138536344)
               

               
               768-1072, gnl|Mm7|chrX (55706505-55706211)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               55-212, gnl|bosTau2|chrX (6733533-6733376)
               

               
               55-212, gnl|Hg17|chrX (138557856-138557697)
               

               
               55-212, gnl|Mm7|chrX (55726024-55725866)
               


               
               511-665, gnl|bosTau2|chrX (6719493-6719339)
               

               
               511-665, gnl|Hg17|chrX (138545749-138545595)
               

               
               511-665, gnl|Mm7|chrX (55717420-55717266)
               


               
               768-1072, gnl|bosTau2|chrX (6709972-6709669)
               

               
               768-1072, gnl|Hg17|chrX (138536644-138536344)
               

               
               768-1072, gnl|Mm7|chrX (55706505-55706211)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               mga (0.160205)
               

               
               thg (0.126791)
               

               
               ldo (0.0970026)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mga (0.160205)
               

               
               thg (0.126791)
               

               
               ldo (0.0970026)

	55-212, gnl\|bosTau2\|chrX (6733533-6733376)
	55-212, gnl\|Hg17\|chrX (138557856-138557697)
	55-212, gnl\|Mm7\|chrX (55726024-55725866)

	511-665, gnl\|bosTau2\|chrX (6719493-6719339)
	511-665, gnl\|Hg17\|chrX (138545749-138545595)
	511-665, gnl\|Mm7\|chrX (55717420-55717266)

	768-1072, gnl\|bosTau2\|chrX (6709972-6709669)
	768-1072, gnl\|Hg17\|chrX (138536644-138536344)
	768-1072, gnl\|Mm7\|chrX (55706505-55706211)