Ss1.1-mA2-MI-P-A2-aey-c-08-1-UM.s1.3
|
ATAGAAACCGCAGCTGAGGCAGCAGTCACTGTTGGTGCCGTCACCCGGCTGAGTGTATAA
CCCTAAGCTCACTCGCCGTGGGTGCCTCCTCGGTTCCCGGGGGGCTCCGGCAGCCCTGAG
GGGCAAAGCGGCAGGACGCCTTTCTTCAGAGAAGAGGCGACGTCGCAGCCCCGGATGCGG
CCAGAGGGCGCGGGAATGGAGCTTGGCGGCTGCGAGGAGAGCTTGCCGGAGGAGAGCAGG
AGGGAGCACTGGCAGTTGCTGGGTAATTTGAAGACTACTGTGGAGGGTTTAGTATCAGCC
AATAGCCCCAACGTCTGGTCCAAGTATGGTGGCCTGGAAAGGCTTTGTAGGGACATGCAG
AGCATCCTCTATCATGGGCTCATCCATGACCAGGTGTGTTGCCGCCAGACTGACTACTGG
CAATTTGTGAAAGACATCCGCTGGCTCAGCCCCCACTCAGCCCTTCACGTGGAAAAGTTC
ATCAACTTGCATGAGAGCAGCCAGAGCAGCACTGATGGCGTGAGCGAGCGTGCCGTGGCA
GAGCTGTGGCTGCAGCATAGTTTGCAGTGCCATTGTCTCTCAGCCCAGCTCCGACCTCTA
CTGGGGGATAGACAGTATATCAGAAAATTCTACACAGGTAGGTGGAGGTCACCCCAGCAA
GGACTGGTGCATGTACTTCCTCATTCTCTTCCTCTTCACTCTTCCTTTATAGATTCACTC
TTATCCCAGGGTCTCCTACTTTCCCTTGATGCCACAGAGATTCTAATCAGAAACATGTGT
TTGTTCTTCTCTCTAACCTTCTATGTAAACACAGTCACACTTTACGCTAAGGTATTCACT
GCTTCCATACACACAAATCAATAAGAACAACTACTATTGGAGTTCCTGTCATGGCTCAGT
GGTTAACAAACCCAACTAGGATCCATGAGGACACGGATTCGATCCCTGGCCTCACTCAGT
GAGTTAAGGATCTGGCGTTGCCATGAGCTGTGGTATAGGTCACAGACGTGACTCGGAGCC
CACATTGCTGTGGCTGTGGCCAGCAGCTGTAGCTCTGATTAGACACCTAGCCTGGGAACC
TCCACATGCCTCGGTGCAGCCCTAAAAAGACAGACAGACAGACAGACAGAAAGAAAGAAA
GAAAGAAAGAAAGAAAGAAAAGAAAGAAAGAGAGAAAAGAATAACTACTATTTACTCAGT
TTCCTATGTTCCAATTACTGTTATGTATTTTTTATACATATATGTTGAGTAGCAGTCCTG
AGAGTTGGGTATTAATATTCTTGTTTTCTAATCAGGAAAGCAGAGTTCAAGCAGGTCAGG
TAATTTGGCCAAAGTCACTCAGAACCAGAATTCAAATATGGATCCTTGAAGCCTCTTGTC
ATGGCTTGTCTGCTATACTGCACATTAATTAACCTCTTCTCAACTTTGTCTCTAGTTCCT
TTCTGTCCACAGGGTATGATTCACCTCAAGTCACTTTTATCTTTTCCCTCTCTCCTTCCC
TGAGCTTCTCCCAAGGCCTTACAGGGAGGCTAAAGTTCTCCCTACTGGTCTCCATCATTG
TGATAGTTTTCTCTCCTCAGATACTGCTTTCCTGCTAAGCGACGCCCATGTCACAGCCAT
GCTCCAGTGCCTAGAAGCAGTGGAACAGAACAACCCTCGTCTCCTGGCTCAGATTGATGC
ATCTATGGTAAAAGGGTCAAGGGAGTATCTGTATCTATATTCTGGCCTCACCATGATGTA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ATAGAAACCGCAGCTGAGGCAGCAGTCACTGTTGGTGCCGTCACCCGGCTGAGTGTATAA
CCCTAAGCTCACTCGCCGTGGGTGCCTCCTCGGTTCCCGGGGGGCTCCGGCAGCCCTGAG
GGGCAAAGCGGCAGGACGCCTTTCTTCAGAGAAGAGGCGACGTCGCAGCCCCGGATGCGG
CCAGAGGGCGCGGGAATGGAGCTTGGCGGCTGCGAGGAGAGCTTGCCGGAGGAGAGCAGG
AGGGAGCACTGGCAGTTGCTGGGTAATTTGAAGACTACTGTGGAGGGTTTAGTATCAGCC
AATAGCCCCAACGTCTGGTCCAAGTATGGTGGCCTGGAAAGGCTTTGTAGGGACATGCAG
AGCATCCTCTATCATGGGCTCATCCATGACCAGGTGTGTTGCCGCCAGACTGACTACTGG
CAATTTGTGAAAGACATCCGCTGGCTCAGCCCCCACTCAGCCCTTCACGTGGAAAAGTTC
ATCAACTTGCATGAGAGCAGCCAGAGCAGCACTGATGGCGTGAGCGAGCGTGCCGTGGCA
GAGCTGTGGCTGCAGCATAGTTTGCAGTGCCATTGTCTCTCAGCCCAGCTCCGACCTCTA
CTGGGGGATAGACAGTATATCAGAAAATTCTACACAGGTAGGTGGAGGTCACCCCAGCAA
GGACTGGTGCATGTACTTCCTCATTCTCTTCCTCTTCACTCTTCCTTTATAGATTCACTC
TTATCCCAGGGTCTCCTACTTTCCCTTGATGCCACAGAGATTCTAATCAGAAACATGTGT
TTGTTCTTCTCTCTAACCTTCTATGTAAACACAGTCACACTTTACGCTAAGGTATTCACT
GCTTCCATACACACAAATCAATAAGAACAACTACTATTGGAGTTCCTGTCATGGCTCAGT
GGTTAACAAACCCAACTAGGATCCATGAGGACACGGATTCGATCCCTGGCCTCACTCAGT
GAGTTAAGGATCTGGCGTTGCCATGAGCTGTGGTATAGGTCACAGACGTGACTCGGAGCC
CACATTGCTGTGGCTGTGGCCAGCAGCTGTAGCTCTGATTAGACACCTAGCCTGGGAACC
TCCACATGCCTCGGTGCAGCCCTAAAAAGACAGACAGACAGACAGACAGAAAGAAAGAAA
GAAAGAAAGAAAGAAAGAAAAGAAAGAAAGAGAGAAAAGAATAACTACTATTTACTCAGT
TTCCTATGTTCCAATTACTGTTATGTATTTTTTATACATATATGTTGAGTAGCAGTCCTG
AGAGTTGGGTATTAATATTCTTGTTTTCTAATCAGGAAAGCAGAGTTCAAGCAGGTCAGG
TAATTTGGCCAAAGTCACTCAGAACCAGAATTCAAATATGGATCCTTGAAGCCTCTTGTC
ATGGCTTGTCTGCTATACTGCACATTAATTAACCTCTTCTCAACTTTGTCTCTAGTTCCT
TTCTGTCCACAGGGTATGATTCACCTCAAGTCACTTTTATCTTTTCCCTCTCTCCTTCCC
TGAGCTTCTCCCAAGGCCTTACAGGGAGGCTAAAGTTCTCCCTACTGGTCTCCATCATTG
TGATAGTTTTCTCTCCTCAGATACTGCTTTCCTGCTAAGCGACGCCCATGTCACAGCCAT
GCTCCAGTGCCTAGAAGCAGTGGAACAGAACAACCCTCGTCTCCTGGCTCAGATTGATGC
ATCTATGGTAAAAGGGTCAAGGGAGTATCTGTATCTATATTCTGGCCTCACCATGATGTA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1426-1579, DB814226 full-length enriched swine cDNA library, adult ovary Sus
(dbj|DB814226.1|), blast E-value=0, identity=98.7% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
1426-1579, DB814226 full-length enriched swine cDNA library, adult ovary Sus
(dbj|DB814226.1|), blast E-value=0, identity=98.7% |
|
3-240, gnl|bosTau2|chr1 (42517046-42516814) |
|
3-240, gnl|canFam2|chr33 (31998177-31997727) |
|
3-240, gnl|dasNov1|scaffold_16981 (32675-32180) |
|
3-240, gnl|echTel1|scaffold_253111 (7427-6915) |
|
3-240, gnl|hg17|chr3 (198951539-198952054) |
|
3-240, gnl|Hg17|chr3 (198952074-198951835) |
|
3-240, gnl|loxAfr1|scaffold_126807 (4926-4412) |
|
3-240, gnl|mm7|chr16 (32542324-32542835) |
|
3-240, gnl|Mm7|chr16 (32542854-32542616) |
|
3-240, gnl|monDom2|scaffold_24 (25235146-25234708) |
|
3-240, gnl|oryCun1|scaffold_212580 (72144-71637) |
|
3-240, gnl|panTro1|chr2 (203232577-203233092) |
|
3-240, gnl|rn3|chr11 (69793429-69792917) |
|
3-240, gnl|xenTro1|scaffold_67 (1610911-1610370) |
| |
|
476-877, gnl|bosTau2|chr1 (42494396-42493995) |
|
476-877, gnl|Hg17|chr3 (198919884-198919184) |
|
476-877, gnl|Mm7|chr16 (32522515-32522153) |
| |
|
1158-1729, gnl|bosTau2|chr1 (42493808-42493227) |
|
1158-1729, gnl|Hg17|chr3 (198919183-198918689) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
3-240, gnl|bosTau2|chr1 (42517046-42516814) |
|
3-240, gnl|canFam2|chr33 (31998177-31997727) |
|
3-240, gnl|dasNov1|scaffold_16981 (32675-32180) |
|
3-240, gnl|echTel1|scaffold_253111 (7427-6915) |
|
3-240, gnl|hg17|chr3 (198951539-198952054) |
|
3-240, gnl|Hg17|chr3 (198952074-198951835) |
|
3-240, gnl|loxAfr1|scaffold_126807 (4926-4412) |
|
3-240, gnl|mm7|chr16 (32542324-32542835) |
|
3-240, gnl|Mm7|chr16 (32542854-32542616) |
|
3-240, gnl|monDom2|scaffold_24 (25235146-25234708) |
|
3-240, gnl|oryCun1|scaffold_212580 (72144-71637) |
|
3-240, gnl|panTro1|chr2 (203232577-203233092) |
|
3-240, gnl|rn3|chr11 (69793429-69792917) |
|
3-240, gnl|xenTro1|scaffold_67 (1610911-1610370) |
| |
|
476-877, gnl|bosTau2|chr1 (42494396-42493995) |
|
476-877, gnl|Hg17|chr3 (198919884-198919184) |
|
476-877, gnl|Mm7|chr16 (32522515-32522153) |
| |
|
1158-1729, gnl|bosTau2|chr1 (42493808-42493227) |
|
1158-1729, gnl|Hg17|chr3 (198919183-198918689) |