Ss1.1-mA2-MI-P-A2-afc-d-12-1-UM.s1.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGACATCACTTGTTAGAAGAGCAACTCTGAAAGAAAACGAGCAAATTCCAAAATATGAAA AGGTTCACAATTTCAAGGTCCATACATTCAGAGGGCCACACTGGTGTGAATACTGTGCCA ACTTCATGTGGGGGCTCATTGCTCAGGGAGTGAAATGTGCAGATTGTGGTTTGAATGTTC ATAAGCAGTGTTCCAAGATGGTCCCAAATGACTGTAAGCCAGACTTGAAACACGTCAAGA AGGTGTACAGTTGCGACCTTACAACACTTGTGAAAGCGCACATCACTAAGCGGCCCATGG TGGTGGACATGTGCATCAGGGAGATCGAGTCTCGAGGTCTTAATTCTGAAGGACTGTACC GAGTTTCAGGATTTAGTGACCTCATTGAAGATGTCAAGATGGCTTTTGACAGAGATGGTG AGAAAGCAGATATTTCTGTGAACATGTATGAAGATATCAACATTATCACTGGTGCGCTGA AACTGTACTTCAGGGATTTACCAATTCCACTCATCACGTATGACGCCTACCCGAAGTTCA TAGAGTCTGCCAAAATCATGGATCCTGATGAGCAATTAGAAACCCTCCATGAAGCACTGA AACTGCTGCCGCCAGCTCACTGCGAAACCCTCCGGTACCTCATGGCGCATCTGAAGAGAG TGACCCTCCACGAAAAGGAGAACCTGATGAATGCGGAGAACCTTGGGATTGTTTTCGGCC CGACCCTCATGAGGTCTCCAGAGCTCGATGCCATGGCCGCACTGAACGATATACGATACC AGAGACTGGTGGTAGAGCTGCTTATCAAAAACGAAGACATTTTATTTTAAATTTTTAGTT TGAAGGAAAACAAAAATGTTTTACAGATGAAGGAATGTTTTATAGTAATTTAATTGGCTC TTATAGCTGAATTATTTCTTGGTTAGAAGTTCGGGCATATAACCAGATGAAAATGAAGGA ACTTTTCCATTGTTTCTGTAGCACCGCTCAGCTGTCCTTGTAAAACCGTGAACACACGCT TTCCAATTCTAGTAATCCTGGGTGTTTATCATGTTAAGAGAATCTCAAGCTATTGCATGA TTAGCCCCCTGTTTGGCAAGGGAACCCCATACAAAGGAGACACCAAGCCTGCACCGCCCC TTCGTCCTGGGTCGCCTGTGGTTGTGATTCAGCATGTTTCGCAGAGTAAATCTGTCGTGA CTTCGCTTTTGGGTCCTCCGTCATTGGTTTCTGATGCTTACATAAACATGCACACACACG GATCAAACGGCACCTCTGGCTGCTGCATTGCCATAGACTATAACATATGCCTACTTTCTC AAATGCTTTATTTCTGGTTTCTCTTAGTTCTTCTCTAACATAGTACTTTCTTTCCAGCAA AAGCAGAATGTGTTTTCAGATTTGCTTTAGTAAATTATCTATACCAATAAAAAAAGAACA ACGCAGAGCATTTTCTGTTAAATTATTATTGGTTTTCAGTTGTAATTTTGTGTTTTTATC TGGCATGCATTTATTAATTTATTAAATTTGGCTTTTAGAAATCAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGACATCACTTGTTAGAAGAGCAACTCTGAAAGAAAACGAGCAAATTCCAAAATATGAAA AGGTTCACAATTTCAAGGTCCATACATTCAGAGGGCCACACTGGTGTGAATACTGTGCCA ACTTCATGTGGGGGCTCATTGCTCAGGGAGTGAAATGTGCAGATTGTGGTTTGAATGTTC ATAAGCAGTGTTCCAAGATGGTCCCAAATGACTGTAAGCCAGACTTGAAACACGTCAAGA AGGTGTACAGTTGCGACCTTACAACACTTGTGAAAGCGCACATCACTAAGCGGCCCATGG TGGTGGACATGTGCATCAGGGAGATCGAGTCTCGAGGTCTTAATTCTGAAGGACTGTACC GAGTTTCAGGATTTAGTGACCTCATTGAAGATGTCAAGATGGCTTTTGACAGAGATGGTG AGAAAGCAGATATTTCTGTGAACATGTATGAAGATATCAACATTATCACTGGTGCGCTGA AACTGTACTTCAGGGATTTACCAATTCCACTCATCACGTATGACGCCTACCCGAAGTTCA TAGAGTCTGCCAAAATCATGGATCCTGATGAGCAATTAGAAACCCTCCATGAAGCACTGA AACTGCTGCCGCCAGCTCACTGCGAAACCCTCCGGTACCTCATGGCGCATCTGAAGAGAG TGACCCTCCACGAAAAGGAGAACCTGATGAATGCGGAGAACCTTGGGATTGTTTTCGGCC CGACCCTCATGAGGTCTCCAGAGCTCGATGCCATGGCCGCACTGAACGATATACGATACC AGAGACTGGTGGTAGAGCTGCTTATCAAAAACGAAGACATTTTATTTTAAATTTTTAGTT TGAAGGAAAACAAAAATGTTTTACAGATGAAGGAATGTTTTATAGTAATTTAATTGGCTC TTATAGCTGAATTATTTCTTGGTTAGAAGTTCGGGCATATAACCAGATGAAAATGAAGGA ACTTTTCCATTGTTTCTGTAGCACCGCTCAGCTGTCCTTGTAAAACCGTGAACACACGCT TTCCAATTCTAGTAATCCTGGGTGTTTATCATGTTAAGAGAATCTCAAGCTATTGCATGA TTAGCCCCCTGTTTGGCAAGGGAACCCCATACAAAGGAGACACCAAGCCTGCACCGCCCC TTCGTCCTGGGTCGCCTGTGGTTGTGATTCAGCATGTTTCGCAGAGTAAATCTGTCGTGA CTTCGCTTTTGGGTCCTCCGTCATTGGTTTCTGATGCTTACATAAACATGCACACACACG GATCAAACGGCACCTCTGGCTGCTGCATTGCCATAGACTATAACATATGCCTACTTTCTC AAATGCTTTATTTCTGGTTTCTCTTAGTTCTTCTCTAACATAGTACTTTCTTTCCAGCAA AAGCAGAATGTGTTTTCAGATTTGCTTTAGTAAATTATCTATACCAATAAAAAAAGAACA ACGCAGAGCATTTTCTGTTAAATTATTATTGGTTTTCAGTTGTAATTTTGTGTTTTTATC TGGCATGCATTTATTAATTTATTAAATTTGGCTTTTAGAAATCAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 153-338, gnl|bosTau2|chr2 (14795371-14795186) | |
| 153-338, gnl|canFam2|chr36 (21824156-21824373) | |
| 153-338, gnl|danRer3|chrNA (84898327-84898552) | |
| 153-338, gnl|dasNov1|scaffold_3554 (23176-22961) | |
| 153-338, gnl|echTel1|scaffold_284415 (125973-125748) | |
| 153-338, gnl|fr1|chrUn (265080443-265080647) | |
| 153-338, gnl|galGal2|chr7 (17620228-17620025) | |
| 153-338, gnl|hg17|chr2 (175502535-175502754) | |
| 153-338, gnl|Hg17|chr2 (175502731-175502542) | |
| 153-338, gnl|loxAfr1|scaffold_2470 (81345-81574) | |
| 153-338, gnl|mm7|chr2 (73468584-73468798) | |
| 153-338, gnl|Mm7|chr2 (73468776-73468591) | |
| 153-338, gnl|monDom2|scaffold_2 (74470722-74470938) | |
| 153-338, gnl|oryCun1|scaffold_89132 (392-604) | |
| 153-338, gnl|panTro1|chr13 (65136992-65137211) | |
| 153-338, gnl|rheMac2|chr12 (38438623-38438842) | |
| 153-338, gnl|rn3|chr3 (56053413-56053628) | |
| 153-338, gnl|tetNig1|chr2 (11231080-11230895) | |
| 153-338, gnl|xenTro1|scaffold_546 (48215-48000) | |
| 161-320, gnl|bosTau2|chr14 (10384759-10384918) | |
| 161-320, gnl|Hg17|chr2 (175502719-175502560) | |
| 161-320, gnl|Mm7|chr2 (73468768-73468609) | |
| 410-552, gnl|bosTau2|chr2 (14791581-14791439) | |
| 410-552, gnl|Hg17|chr2 (175499282-175499140) | |
| 410-552, gnl|Mm7|chr2 (73461777-73461637) | |
| 657-1548, gnl|bosTau2|chr2 (14783285-14782395) | |
| 657-1548, gnl|Hg17|chr2 (175490524-175489630) | |
| 657-1548, gnl|Mm7|chr2 (73456914-73456052) | |
| 661-846, gnl|bosTau2|chr19 (2074291-2074468) | |
| 661-846, gnl|Hg17|chr2 (175490520-175490335) | |
| 661-846, gnl|Mm7|chr2 (73456910-73456726) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 153-338, gnl|bosTau2|chr2 (14795371-14795186) | |
| 153-338, gnl|canFam2|chr36 (21824156-21824373) | |
| 153-338, gnl|danRer3|chrNA (84898327-84898552) | |
| 153-338, gnl|dasNov1|scaffold_3554 (23176-22961) | |
| 153-338, gnl|echTel1|scaffold_284415 (125973-125748) | |
| 153-338, gnl|fr1|chrUn (265080443-265080647) | |
| 153-338, gnl|galGal2|chr7 (17620228-17620025) | |
| 153-338, gnl|hg17|chr2 (175502535-175502754) | |
| 153-338, gnl|Hg17|chr2 (175502731-175502542) | |
| 153-338, gnl|loxAfr1|scaffold_2470 (81345-81574) | |
| 153-338, gnl|mm7|chr2 (73468584-73468798) | |
| 153-338, gnl|Mm7|chr2 (73468776-73468591) | |
| 153-338, gnl|monDom2|scaffold_2 (74470722-74470938) | |
| 153-338, gnl|oryCun1|scaffold_89132 (392-604) | |
| 153-338, gnl|panTro1|chr13 (65136992-65137211) | |
| 153-338, gnl|rheMac2|chr12 (38438623-38438842) | |
| 153-338, gnl|rn3|chr3 (56053413-56053628) | |
| 153-338, gnl|tetNig1|chr2 (11231080-11230895) | |
| 153-338, gnl|xenTro1|scaffold_546 (48215-48000) | |
| 161-320, gnl|bosTau2|chr14 (10384759-10384918) | |
| 161-320, gnl|Hg17|chr2 (175502719-175502560) | |
| 161-320, gnl|Mm7|chr2 (73468768-73468609) | |
| 410-552, gnl|bosTau2|chr2 (14791581-14791439) | |
| 410-552, gnl|Hg17|chr2 (175499282-175499140) | |
| 410-552, gnl|Mm7|chr2 (73461777-73461637) | |
| 657-1548, gnl|bosTau2|chr2 (14783285-14782395) | |
| 657-1548, gnl|Hg17|chr2 (175490524-175489630) | |
| 657-1548, gnl|Mm7|chr2 (73456914-73456052) | |
| 661-846, gnl|bosTau2|chr19 (2074291-2074468) | |
| 661-846, gnl|Hg17|chr2 (175490520-175490335) | |
| 661-846, gnl|Mm7|chr2 (73456910-73456726) |
| Expressed library(ies): 23 entry(ies) | More info |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
| fco (6.28832) | |
| ret (1.5448) | |
| cbe (0.717703) | |
| spc (0.680195) | |
| fcc (0.593354) | |
| fhi (0.508733) | |
| cmu (0.372787) | |
| fbs (0.350693) | |
| pla (0.267344) | |
| sug (0.254582) | |
| tes (0.207814) | |
| hea (0.204499) | |
| sin (0.174948) | |
| rec (0.17307) | |
| eye (0.170503) | |
| isp (0.150376) | |
| ski (0.146735) | |
| spl (0.143184) | |
| ute (0.132784) | |
| cbr (0.127975) | |
| tra (0.123092) | |
| ebs (0.118301) | |
| cty (0.10408) |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fco (6.28832) | |
| ret (1.5448) | |
| cbe (0.717703) | |
| spc (0.680195) | |
| fcc (0.593354) | |
| fhi (0.508733) | |
| cmu (0.372787) | |
| fbs (0.350693) | |
| pla (0.267344) | |
| sug (0.254582) | |
| tes (0.207814) | |
| hea (0.204499) | |
| sin (0.174948) | |
| rec (0.17307) | |
| eye (0.170503) | |
| isp (0.150376) | |
| ski (0.146735) | |
| spl (0.143184) | |
| ute (0.132784) | |
| cbr (0.127975) | |
| tra (0.123092) | |
| ebs (0.118301) | |
| cty (0.10408) |