Non-Coding RNA Search

Ss1.1-mA2-MI-P-A2-afd-d-08-1-UM.s1.3

Sequence:


               
               CCTTAAGTGCCTTTTCCTTTGTTAATTTCCCTTAAGATGTGACTTTTTTGCACATGAAAT
TTCTGACAACCTTTGAAATTCCCTTAAATTTGCTAATTTTTAGCTGTTCAGAATTGATTG
GGTATTTTTCCAAATGTCTGTCTGATGGGCCCTTCTCCCTGCCAGTGCACACTGCTCACA
GTGTATCTGCCCTGTAGGTGAGTGAGGCTGTAAGTATCCTCTCAGGACCATGGTACCACT
TCCTTTTTCACTAATTCCTAATCCCATGTTTAATTCCCTTTAAATGAATGGTGTCAGTCT
AAAGTAAATGTGATAGAATATTATTCTAGGATCAGTGTCTTTTGTTTGGAAAATCAGCAT
CTCTTGGCTTCCCCTCAGCCAACCCAGCAAACGGAGATTATCAGACCTTATTGATTTTTA
TTTCCATTTGGTATTGGTCTTTTACTTACTGTAACTAAAAAGGCTAATGATTTGCCTGGT
TAATGTTTGTGGCCTTTGCAAATCCAAGATTAAATCATTTTTTTTAATTGCCAGATACTG
TGTTTCTTAAACTTTTTAAAGTACATCAACTTTTTGAATGTATATAAAATAGACATGCAT
AGTGATTATATGTTCATTTTTCAATTTTCCAGAATAACTGAAGTGAAGTGATGGACTCTG
ATTTGGAGAGTACTAAGACGTGAAAGATACACACTTGTGTTTAAGCACCACGGCCTTGAT
TCACTGTTTGGGAGAAGAAAATAAGAAGAGTAACTGGTTTCCATCTATGGGAGAAAGTAA
ATCATTGACCTTTAAATTGTTACAGTTTAATTTTTATTCAAAGCATTTTAATTTAGTTAT
TAAAATTACAATCTGTGTTGTGTGCCCAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTAAGTGCCTTTTCCTTTGTTAATTTCCCTTAAGATGTGACTTTTTTGCACATGAAAT
TTCTGACAACCTTTGAAATTCCCTTAAATTTGCTAATTTTTAGCTGTTCAGAATTGATTG
GGTATTTTTCCAAATGTCTGTCTGATGGGCCCTTCTCCCTGCCAGTGCACACTGCTCACA
GTGTATCTGCCCTGTAGGTGAGTGAGGCTGTAAGTATCCTCTCAGGACCATGGTACCACT
TCCTTTTTCACTAATTCCTAATCCCATGTTTAATTCCCTTTAAATGAATGGTGTCAGTCT
AAAGTAAATGTGATAGAATATTATTCTAGGATCAGTGTCTTTTGTTTGGAAAATCAGCAT
CTCTTGGCTTCCCCTCAGCCAACCCAGCAAACGGAGATTATCAGACCTTATTGATTTTTA
TTTCCATTTGGTATTGGTCTTTTACTTACTGTAACTAAAAAGGCTAATGATTTGCCTGGT
TAATGTTTGTGGCCTTTGCAAATCCAAGATTAAATCATTTTTTTTAATTGCCAGATACTG
TGTTTCTTAAACTTTTTAAAGTACATCAACTTTTTGAATGTATATAAAATAGACATGCAT
AGTGATTATATGTTCATTTTTCAATTTTCCAGAATAACTGAAGTGAAGTGATGGACTCTG
ATTTGGAGAGTACTAAGACGTGAAAGATACACACTTGTGTTTAAGCACCACGGCCTTGAT
TCACTGTTTGGGAGAAGAAAATAAGAAGAGTAACTGGTTTCCATCTATGGGAGAAAGTAA
ATCATTGACCTTTAAATTGTTACAGTTTAATTTTTATTCAAAGCATTTTAATTTAGTTAT
TAAAATTACAATCTGTGTTGTGTGCCCAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               416-534, - strand, RNAz p=0.985596

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               416-534, - strand, RNAz p=0.985596

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               50-869, gnl|bosTau2|chr1 (29068759-29069597)
               

               
               50-869, gnl|Hg17|chr3 (109249410-109248602)
               

               
               50-869, gnl|Mm7|chr16 (49670798-49671777)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               50-869, gnl|bosTau2|chr1 (29068759-29069597)
               

               
               50-869, gnl|Hg17|chr3 (109249410-109248602)
               

               
               50-869, gnl|Mm7|chr16 (49670798-49671777)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               gul (0.177588)
               

               
               lin (0.145603)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)
               

               
               lin (0.145603)

	50-869, gnl\|bosTau2\|chr1 (29068759-29069597)
	50-869, gnl\|Hg17\|chr3 (109249410-109248602)
	50-869, gnl\|Mm7\|chr16 (49670798-49671777)