Ss1.1-mA2-MI-P-A2-afd-f-08-1-UM.s1.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCTCCTGACACGTAGCAACGGGGCCGGTACCGGGTCCTGAGCCGAGTTTGGGGGCTGCT GGGGGCTGCGGGAGCCACCGCCGCCGCCGCCGCGTTAGAGCATCTGCCATGTCAGGCTTT GAAAACCTAAACACGGATTTCTACCAGACGAGTTACAGCATCGATGACCAGTCACAGCAA ACCTATGACTATGGAGGAAGTGGAGGACCCTATAGCAAACAGTATGCTGGCTATGACTAT TCGCATCAAGGCCGATTTGTCCCTCCAGACATGATGCAGCCACAGCAGCCTTACACGGGG CAGATTTTCCAGCCAACTCAGGCGTATACTCCAACTGCACCTCAGCCGTTCTATGGAAAC AACTTTGAAGATGAGCCACCTTTGTTAGAAGAATTAGGTATCAATTTTGACCACATCTGG CAAAAAACACTGACAGTGTTACACCCGTTGAAAGTAGCAGATGGCAGTATCATGAATGAG ACTGATTTGGCAGGACCAATGGTTTTTTGCCTTGCCTTTGGAGCCACTTTGTTACTGGCT GGCAAAATCCAGTTTGGCTATGTATATGGCATCAGCGCAATTGGATGCCTGGGAATGTTT TGTTTATTAAACTTAATGAGTATGACTGGTGTTTCCTTTGGTTGTGTGGCAAGTGTCCTT GGATATTGTCTTCTTCCCATGATCCTACTTTCCAGCTTTGCAGTGGTATTTTCTTTACAA GGAATGGTAGGAATCGTTCTCACTGCTGGAATCATTGGATGGTGTAGTTTTTCTGCTTCC AAGATTTTTATCTCTGCATTAGCCATGGAAGGCCAACAGCTTCTGGTAGCGTATCCTTGT GCTCTGTTATACGGAGTCTTTGCCCTCATTTCCGTTTTTTGAGCCGAGTTTGTCTGGAAT GTGGACATCATTGGGCCATATATCAAAAAGGACTTGGAACTCTTAAATCGGACCAGCAAA CTGCAAACTACAGTGCAACTCTCAGCAGATCTGATGTTTGACTCTTGGAGCAATGGAAGT AAACGTGTATCTTTTGTTCATTTTTATAGAACTTTTGAATACTATATTGGATTTACCTGC AGTTGACTAGGTTTAAGTGTTTGTGCTTGTACAGATAAGTGCTATTTCTTTCCTGTTCCT GCAGCCTTAGAGGAACAACATTTTTTGTTGCTAATTATATATTACAATGTTTTGATAGAT TTTTATCAACTATGGGAAACCAACCACAGACTTGATAGTCTTTCTTAAAAACAACCCATA GTAAAGAAGATGTGAAACTTGGAGAAATGTTTTTCCAAGGAACTAGGAAAGAAAAATGGC CTGTATTCTCACATCAGATGCATTGAAGCAAAAAAGTGATCCCAGTTGTAAAGTTTTATG AGTTTGCACTTCAGAATTTGACATTCCTCTAAATTATCTCATGGAATTTTGGCTAAAATT CAGCAGTACAGTTAATTCACAGTCTACCTTATTGTAGACATGAAATGTGAAAATGTTTAG ACATTAGCGTTAACTAAACCATAGTGACCCAGCCTGGCTGCGTTAATGCTCAGAGTTGGA TCTCTGTTTCCCAGGAGAAAGAAAGTCACTAACCTTTTTTGAGAAAAATATTTAGTGTCA GTTTTGGTATTGCAATTATCAATGTAAACTGCATTTGATGCTTATTATTAAAATTTTCCC AGTTAATTTAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCTCCTGACACGTAGCAACGGGGCCGGTACCGGGTCCTGAGCCGAGTTTGGGGGCTGCT GGGGGCTGCGGGAGCCACCGCCGCCGCCGCCGCGTTAGAGCATCTGCCATGTCAGGCTTT GAAAACCTAAACACGGATTTCTACCAGACGAGTTACAGCATCGATGACCAGTCACAGCAA ACCTATGACTATGGAGGAAGTGGAGGACCCTATAGCAAACAGTATGCTGGCTATGACTAT TCGCATCAAGGCCGATTTGTCCCTCCAGACATGATGCAGCCACAGCAGCCTTACACGGGG CAGATTTTCCAGCCAACTCAGGCGTATACTCCAACTGCACCTCAGCCGTTCTATGGAAAC AACTTTGAAGATGAGCCACCTTTGTTAGAAGAATTAGGTATCAATTTTGACCACATCTGG CAAAAAACACTGACAGTGTTACACCCGTTGAAAGTAGCAGATGGCAGTATCATGAATGAG ACTGATTTGGCAGGACCAATGGTTTTTTGCCTTGCCTTTGGAGCCACTTTGTTACTGGCT GGCAAAATCCAGTTTGGCTATGTATATGGCATCAGCGCAATTGGATGCCTGGGAATGTTT TGTTTATTAAACTTAATGAGTATGACTGGTGTTTCCTTTGGTTGTGTGGCAAGTGTCCTT GGATATTGTCTTCTTCCCATGATCCTACTTTCCAGCTTTGCAGTGGTATTTTCTTTACAA GGAATGGTAGGAATCGTTCTCACTGCTGGAATCATTGGATGGTGTAGTTTTTCTGCTTCC AAGATTTTTATCTCTGCATTAGCCATGGAAGGCCAACAGCTTCTGGTAGCGTATCCTTGT GCTCTGTTATACGGAGTCTTTGCCCTCATTTCCGTTTTTTGAGCCGAGTTTGTCTGGAAT GTGGACATCATTGGGCCATATATCAAAAAGGACTTGGAACTCTTAAATCGGACCAGCAAA CTGCAAACTACAGTGCAACTCTCAGCAGATCTGATGTTTGACTCTTGGAGCAATGGAAGT AAACGTGTATCTTTTGTTCATTTTTATAGAACTTTTGAATACTATATTGGATTTACCTGC AGTTGACTAGGTTTAAGTGTTTGTGCTTGTACAGATAAGTGCTATTTCTTTCCTGTTCCT GCAGCCTTAGAGGAACAACATTTTTTGTTGCTAATTATATATTACAATGTTTTGATAGAT TTTTATCAACTATGGGAAACCAACCACAGACTTGATAGTCTTTCTTAAAAACAACCCATA GTAAAGAAGATGTGAAACTTGGAGAAATGTTTTTCCAAGGAACTAGGAAAGAAAAATGGC CTGTATTCTCACATCAGATGCATTGAAGCAAAAAAGTGATCCCAGTTGTAAAGTTTTATG AGTTTGCACTTCAGAATTTGACATTCCTCTAAATTATCTCATGGAATTTTGGCTAAAATT CAGCAGTACAGTTAATTCACAGTCTACCTTATTGTAGACATGAAATGTGAAAATGTTTAG ACATTAGCGTTAACTAAACCATAGTGACCCAGCCTGGCTGCGTTAATGCTCAGAGTTGGA TCTCTGTTTCCCAGGAGAAAGAAAGTCACTAACCTTTTTTGAGAAAAATATTTAGTGTCA GTTTTGGTATTGCAATTATCAATGTAAACTGCATTTGATGCTTATTATTAAAATTTTCCC AGTTAATTTAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 62 entry(ies) | More info |
| Aligned organism(s): 62 entry(ies) | Help | Less info |
| 97-241, gnl|bosTau2|chr7 (36958996-36958852) | |
| 97-241, gnl|canFam2|chr2 (41756848-41756946) | |
| 97-241, gnl|danRer3|chr21 (29173112-29173046) | |
| 97-241, gnl|dasNov1|scaffold_5003 (21582-21681) | |
| 97-241, gnl|echTel1|scaffold_323686 (76469-76370) | |
| 97-241, gnl|galGal2|chr13 (16578751-16578816) | |
| 97-241, gnl|hg17|chr5 (143529571-143529670) | |
| 97-241, gnl|Hg17|chr5 (143529724-143529580) | |
| 97-241, gnl|loxAfr1|scaffold_2823 (73989-73890) | |
| 97-241, gnl|mm7|chr18 (40594991-40595090) | |
| 97-241, gnl|Mm7|chr18 (40595144-40595000) | |
| 97-241, gnl|monDom2|scaffold_6 (63427752-63427656) | |
| 97-241, gnl|oryCun1|scaffold_83999 (4698-4599) | |
| 97-241, gnl|panTro1|chr4 (150172013-150172112) | |
| 97-241, gnl|rheMac2|chr6 (140594322-140594421) | |
| 97-241, gnl|rn3|chr18 (33296961-33297060) | |
| 97-241, gnl|tetNig1|chr7 (9155087-9155154) | |
| 97-241, gnl|xenTro1|scaffold_306 (238193-238282) | |
| 381-527, gnl|bosTau2|chr6 (33355222-33355076) | |
| 381-527, gnl|Hg17|chr4 (44472506-44472358) | |
| 381-527, gnl|Mm7|chr5 (68877784-68877638) | |
| 537-719, gnl|bosTau2|chr7 (36946366-36946184) | |
| 537-719, gnl|canFam2|chr2 (41747872-41748096) | |
| 537-719, gnl|danRer3|chr21 (29178438-29178210) | |
| 537-719, gnl|dasNov1|scaffold_133327 (4814-5038) | |
| 537-719, gnl|echTel1|scaffold_323686 (86721-86497) | |
| 537-719, gnl|fr1|chrUn (216992271-216992475) | |
| 537-719, gnl|galGal2|chr13 (16573441-16573666) | |
| 537-719, gnl|hg17|chr5 (143521955-143522177) | |
| 537-719, gnl|Hg17|chr5 (143522157-143521975) | |
| 537-719, gnl|loxAfr1|scaffold_2823 (83729-83509) | |
| 537-719, gnl|mm7|chr18 (40583945-40584166) | |
| 537-719, gnl|Mm7|chr18 (40584146-40583964) | |
| 537-719, gnl|monDom2|scaffold_6 (63436378-63436159) | |
| 537-719, gnl|oryCun1|scaffold_185039 (118386-118163) | |
| 537-719, gnl|panTro1|chr4 (150164441-150164663) | |
| 537-719, gnl|rheMac2|chr6 (140584687-140584912) | |
| 537-719, gnl|rn3|chr18 (33286565-33286788) | |
| 537-719, gnl|tetNig1|chr7 (9154175-9154388) | |
| 537-719, gnl|xenTro1|scaffold_306 (235696-235909) | |
| 751-882, gnl|bosTau2|chr6 (33344420-33344289) | |
| 751-882, gnl|canFam2|chr13 (44074731-44074923) | |
| 751-882, gnl|danRer3|chr21 (29178741-29178562) | |
| 751-882, gnl|dasNov1|scaffold_297003 (1096-905) | |
| 751-882, gnl|echTel1|scaffold_316433 (6068-6255) | |
| 751-882, gnl|fr1|chrUn (216992024-216992209) | |
| 751-882, gnl|galGal2|chr4 (68125919-68125726) | |
| 751-882, gnl|hg17|chr4 (44465346-44465538) | |
| 751-882, gnl|Hg17|chr4 (44465490-44465359) | |
| 751-882, gnl|loxAfr1|scaffold_947 (128456-128265) | |
| 751-882, gnl|mm7|chr5 (68873626-68873818) | |
| 751-882, gnl|Mm7|chr5 (68873770-68873639) | |
| 751-882, gnl|monDom2|scaffold_26 (10330617-10330807) | |
| 751-882, gnl|oryCun1|scaffold_200943 (103910-103719) | |
| 751-882, gnl|panTro1|chr3 (47169722-47169914) | |
| 751-882, gnl|rheMac2|chr5 (39764731-39764923) | |
| 751-882, gnl|rn3|chr14 (41131448-41131256) | |
| 751-882, gnl|tetNig1|chr7 (9153925-9154112) | |
| 751-882, gnl|xenTro1|scaffold_306 (234057-234241) | |
| 1126-1701, gnl|bosTau2|chr15 (42440046-42440628) | |
| 1126-1701, gnl|Hg17|chr5 (143519912-143519051) | |
| 1126-1701, gnl|Mm7|chr2 (14417525-14418099) |
| Aligned organism(s): 62 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 97-241, gnl|bosTau2|chr7 (36958996-36958852) | |
| 97-241, gnl|canFam2|chr2 (41756848-41756946) | |
| 97-241, gnl|danRer3|chr21 (29173112-29173046) | |
| 97-241, gnl|dasNov1|scaffold_5003 (21582-21681) | |
| 97-241, gnl|echTel1|scaffold_323686 (76469-76370) | |
| 97-241, gnl|galGal2|chr13 (16578751-16578816) | |
| 97-241, gnl|hg17|chr5 (143529571-143529670) | |
| 97-241, gnl|Hg17|chr5 (143529724-143529580) | |
| 97-241, gnl|loxAfr1|scaffold_2823 (73989-73890) | |
| 97-241, gnl|mm7|chr18 (40594991-40595090) | |
| 97-241, gnl|Mm7|chr18 (40595144-40595000) | |
| 97-241, gnl|monDom2|scaffold_6 (63427752-63427656) | |
| 97-241, gnl|oryCun1|scaffold_83999 (4698-4599) | |
| 97-241, gnl|panTro1|chr4 (150172013-150172112) | |
| 97-241, gnl|rheMac2|chr6 (140594322-140594421) | |
| 97-241, gnl|rn3|chr18 (33296961-33297060) | |
| 97-241, gnl|tetNig1|chr7 (9155087-9155154) | |
| 97-241, gnl|xenTro1|scaffold_306 (238193-238282) | |
| 381-527, gnl|bosTau2|chr6 (33355222-33355076) | |
| 381-527, gnl|Hg17|chr4 (44472506-44472358) | |
| 381-527, gnl|Mm7|chr5 (68877784-68877638) | |
| 537-719, gnl|bosTau2|chr7 (36946366-36946184) | |
| 537-719, gnl|canFam2|chr2 (41747872-41748096) | |
| 537-719, gnl|danRer3|chr21 (29178438-29178210) | |
| 537-719, gnl|dasNov1|scaffold_133327 (4814-5038) | |
| 537-719, gnl|echTel1|scaffold_323686 (86721-86497) | |
| 537-719, gnl|fr1|chrUn (216992271-216992475) | |
| 537-719, gnl|galGal2|chr13 (16573441-16573666) | |
| 537-719, gnl|hg17|chr5 (143521955-143522177) | |
| 537-719, gnl|Hg17|chr5 (143522157-143521975) | |
| 537-719, gnl|loxAfr1|scaffold_2823 (83729-83509) | |
| 537-719, gnl|mm7|chr18 (40583945-40584166) | |
| 537-719, gnl|Mm7|chr18 (40584146-40583964) | |
| 537-719, gnl|monDom2|scaffold_6 (63436378-63436159) | |
| 537-719, gnl|oryCun1|scaffold_185039 (118386-118163) | |
| 537-719, gnl|panTro1|chr4 (150164441-150164663) | |
| 537-719, gnl|rheMac2|chr6 (140584687-140584912) | |
| 537-719, gnl|rn3|chr18 (33286565-33286788) | |
| 537-719, gnl|tetNig1|chr7 (9154175-9154388) | |
| 537-719, gnl|xenTro1|scaffold_306 (235696-235909) | |
| 751-882, gnl|bosTau2|chr6 (33344420-33344289) | |
| 751-882, gnl|canFam2|chr13 (44074731-44074923) | |
| 751-882, gnl|danRer3|chr21 (29178741-29178562) | |
| 751-882, gnl|dasNov1|scaffold_297003 (1096-905) | |
| 751-882, gnl|echTel1|scaffold_316433 (6068-6255) | |
| 751-882, gnl|fr1|chrUn (216992024-216992209) | |
| 751-882, gnl|galGal2|chr4 (68125919-68125726) | |
| 751-882, gnl|hg17|chr4 (44465346-44465538) | |
| 751-882, gnl|Hg17|chr4 (44465490-44465359) | |
| 751-882, gnl|loxAfr1|scaffold_947 (128456-128265) | |
| 751-882, gnl|mm7|chr5 (68873626-68873818) | |
| 751-882, gnl|Mm7|chr5 (68873770-68873639) | |
| 751-882, gnl|monDom2|scaffold_26 (10330617-10330807) | |
| 751-882, gnl|oryCun1|scaffold_200943 (103910-103719) | |
| 751-882, gnl|panTro1|chr3 (47169722-47169914) | |
| 751-882, gnl|rheMac2|chr5 (39764731-39764923) | |
| 751-882, gnl|rn3|chr14 (41131448-41131256) | |
| 751-882, gnl|tetNig1|chr7 (9153925-9154112) | |
| 751-882, gnl|xenTro1|scaffold_306 (234057-234241) | |
| 1126-1701, gnl|bosTau2|chr15 (42440046-42440628) | |
| 1126-1701, gnl|Hg17|chr5 (143519912-143519051) | |
| 1126-1701, gnl|Mm7|chr2 (14417525-14418099) |
| Expressed library(ies): 40 entry(ies) | More info |
| Expressed library(ies): 40 entry(ies) | Help | Less info |
| lyg (1.19792) | |
| ret (1.1586) | |
| cbe (0.956938) | |
| sag (0.730861) | |
| rec (0.692281) | |
| lun (0.601956) | |
| aor (0.585823) | |
| liv (0.585137) | |
| spl (0.572738) | |
| spc (0.566829) | |
| pro (0.512033) | |
| sug (0.509165) | |
| tra (0.492368) | |
| ski (0.440205) | |
| pty (0.428143) | |
| nca (0.410621) | |
| mgm (0.360685) | |
| mga (0.32041) | |
| fco (0.314416) | |
| lin (0.291206) | |
| ova (0.258264) | |
| cbr (0.255951) | |
| mgp (0.230681) | |
| tes (0.207814) | |
| hea (0.204499) | |
| nlu (0.191681) | |
| gul (0.177588) | |
| sin (0.174948) | |
| eye (0.170503) | |
| nje (0.16592) | |
| nco (0.161734) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| csk (0.140746) | |
| ssp (0.13552) | |
| ese (0.126502) | |
| bla (0.124347) | |
| eru (0.120048) | |
| cty (0.10408) | |
| ldo (0.0970026) |
| Expressed library(ies): 40 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lyg (1.19792) | |
| ret (1.1586) | |
| cbe (0.956938) | |
| sag (0.730861) | |
| rec (0.692281) | |
| lun (0.601956) | |
| aor (0.585823) | |
| liv (0.585137) | |
| spl (0.572738) | |
| spc (0.566829) | |
| pro (0.512033) | |
| sug (0.509165) | |
| tra (0.492368) | |
| ski (0.440205) | |
| pty (0.428143) | |
| nca (0.410621) | |
| mgm (0.360685) | |
| mga (0.32041) | |
| fco (0.314416) | |
| lin (0.291206) | |
| ova (0.258264) | |
| cbr (0.255951) | |
| mgp (0.230681) | |
| tes (0.207814) | |
| hea (0.204499) | |
| nlu (0.191681) | |
| gul (0.177588) | |
| sin (0.174948) | |
| eye (0.170503) | |
| nje (0.16592) | |
| nco (0.161734) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| csk (0.140746) | |
| ssp (0.13552) | |
| ese (0.126502) | |
| bla (0.124347) | |
| eru (0.120048) | |
| cty (0.10408) | |
| ldo (0.0970026) |