Ss1.1-mAY1-MI-P-AY1-npv-c-12-0-UI.s1.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAAACATGGCTGCGGCCGTTCGGGACTCACGTGTGAGTGCGGGGAAAAAGCTGAAAAAC TCAGTGAAGAAGAAGAAGAAGATGAAAGTCGTCGCCGCGGCTGTAGCATCGGAGCTGGAC GATAAGGACAAAGACACTGCCGATAACGGAGGTTCTGTAGGAAGCTGTGGATCAGGAGAT AATCGCTTTTCTTCTGATGATGAAGCAGTAGAAGCTGACAACGAAGATGAAGCTGAACCT TGTGACAGTGACAGTGAAGATGCTGCAGAAGCTGGTGTCGGAACCAGTGCGGGCTGGGCA GATGCCATGGCTAAAGTCCTTAACAAGAAAATTCCTAAAAGCAAACCCACCATTCTGGTC AAAAACAAAGAACTGGAAAAGGAAAAAGAAAGGTTAAAGCAAGAGAGACTAGAGAAAAGA AAGCAGCTTGATAAGAAGCGGGAGTGGGAAATGATGTGCAGAGTAAAGCCAGATGTTGTC CAAGACAAAGAACCAGAGCGCAATCTTCAGAGAATTGCAACGAGGGGTGTGGTGCAGTTA TTTAATGCTGTTCAGAAGCATCAGAAGAATGTTGATGAGAAGGTTAAAGAAGCAGGTGGC TCTATTAGAAAGCATGCTAAGTTGCTGTCAGCCGTCTCCAAGAAAGATTTCATCAGTGTT CTGAGAGGGGTGGATGGCGCCCCAAATGAGAAAAGTTCCACCGGGAAGAACTCAAAGGCC AAACAGACTGAGGTGAAAGCCGAAGAGGGCCCGGGATGGACCATCCTGCGTGATGATTTC ATGCTGGGAGCAACCATGAAAGACTGGGACAGAGAGAGTGATGGCCCAGAGGACAGCAGA CCGGGACCTGAAAGTGACTCGGACACGTAACACAGTTCACGGTTTTTTTTTTCCCAGAAA ACTACTTTGGGCTCCGAAAGTTGGGGGATTTTTATGAAGATACCTTGGGGGATTTATATG AAGATACCGTTTGTAAGGAAGCCAAGAGACTCACTGTTAGCAACTTCGGTATTTCCCGTT TTCGTATAAACCTTGTTAAATTATTCTCTTTCAGGCCTTGTATAGTTTACGCATTGTTCC TCAGAACATTTGTAAAAAGAAACATTTCTTCTCGAGATACTCATCTTGCCAGGTTCATTG TCAGTTTTCATATTGGTCATGGATATTGGTATTTTATTTCAGAATCGCCAGTGTTTGTAG AAATGCAATGCTAATACATAATTAAAATGAACGCTCCTTGAAGTTAGTATTTTTCAGCCT TTCAACTTGGTGGGGAGGGTTGGTGTTTGTTTTAATGAGCTGTTGAGAAAACCTGTGTAG CAAAATGTTTATAGTGTTTCTCATTTGGGTTGATGATTTTATTTTTAGATATTATGGCAA ATATGACTTAGAAACATCAAATCTCTGCTTTTATATTATTGGACAGATTTATTTAAGTGT TGGGTTATTTTGGTATGAGAACTTACTGTGGTGGAAATTCTCCTATTTAACTTACGCAGT GAGACATGATTTCTTAGGAAACATACAATGTACTGGCTTCTCCTTTTTTTGTTGTTTTTT TGTTTGTTTTCCTAAACATTTAAATTAGCTGAGGTTCTTTTTTGTGGACCGACTGACAGT GAAATGATAGACAGCAGGCAGTCTGCGTCAGTATGTTGCATCTGATTGGAGAATTGATTC CTTATAGTTGCCTTAAAGATGATTAAATTGGGTGACTTTTAGAATTTAGACGTTAAACAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAAACATGGCTGCGGCCGTTCGGGACTCACGTGTGAGTGCGGGGAAAAAGCTGAAAAAC TCAGTGAAGAAGAAGAAGAAGATGAAAGTCGTCGCCGCGGCTGTAGCATCGGAGCTGGAC GATAAGGACAAAGACACTGCCGATAACGGAGGTTCTGTAGGAAGCTGTGGATCAGGAGAT AATCGCTTTTCTTCTGATGATGAAGCAGTAGAAGCTGACAACGAAGATGAAGCTGAACCT TGTGACAGTGACAGTGAAGATGCTGCAGAAGCTGGTGTCGGAACCAGTGCGGGCTGGGCA GATGCCATGGCTAAAGTCCTTAACAAGAAAATTCCTAAAAGCAAACCCACCATTCTGGTC AAAAACAAAGAACTGGAAAAGGAAAAAGAAAGGTTAAAGCAAGAGAGACTAGAGAAAAGA AAGCAGCTTGATAAGAAGCGGGAGTGGGAAATGATGTGCAGAGTAAAGCCAGATGTTGTC CAAGACAAAGAACCAGAGCGCAATCTTCAGAGAATTGCAACGAGGGGTGTGGTGCAGTTA TTTAATGCTGTTCAGAAGCATCAGAAGAATGTTGATGAGAAGGTTAAAGAAGCAGGTGGC TCTATTAGAAAGCATGCTAAGTTGCTGTCAGCCGTCTCCAAGAAAGATTTCATCAGTGTT CTGAGAGGGGTGGATGGCGCCCCAAATGAGAAAAGTTCCACCGGGAAGAACTCAAAGGCC AAACAGACTGAGGTGAAAGCCGAAGAGGGCCCGGGATGGACCATCCTGCGTGATGATTTC ATGCTGGGAGCAACCATGAAAGACTGGGACAGAGAGAGTGATGGCCCAGAGGACAGCAGA CCGGGACCTGAAAGTGACTCGGACACGTAACACAGTTCACGGTTTTTTTTTTCCCAGAAA ACTACTTTGGGCTCCGAAAGTTGGGGGATTTTTATGAAGATACCTTGGGGGATTTATATG AAGATACCGTTTGTAAGGAAGCCAAGAGACTCACTGTTAGCAACTTCGGTATTTCCCGTT TTCGTATAAACCTTGTTAAATTATTCTCTTTCAGGCCTTGTATAGTTTACGCATTGTTCC TCAGAACATTTGTAAAAAGAAACATTTCTTCTCGAGATACTCATCTTGCCAGGTTCATTG TCAGTTTTCATATTGGTCATGGATATTGGTATTTTATTTCAGAATCGCCAGTGTTTGTAG AAATGCAATGCTAATACATAATTAAAATGAACGCTCCTTGAAGTTAGTATTTTTCAGCCT TTCAACTTGGTGGGGAGGGTTGGTGTTTGTTTTAATGAGCTGTTGAGAAAACCTGTGTAG CAAAATGTTTATAGTGTTTCTCATTTGGGTTGATGATTTTATTTTTAGATATTATGGCAA ATATGACTTAGAAACATCAAATCTCTGCTTTTATATTATTGGACAGATTTATTTAAGTGT TGGGTTATTTTGGTATGAGAACTTACTGTGGTGGAAATTCTCCTATTTAACTTACGCAGT GAGACATGATTTCTTAGGAAACATACAATGTACTGGCTTCTCCTTTTTTTGTTGTTTTTT TGTTTGTTTTCCTAAACATTTAAATTAGCTGAGGTTCTTTTTTGTGGACCGACTGACAGT GAAATGATAGACAGCAGGCAGTCTGCGTCAGTATGTTGCATCTGATTGGAGAATTGATTC CTTATAGTTGCCTTAAAGATGATTAAATTGGGTGACTTTTAGAATTTAGACGTTAAACAG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 150-426, gnl|bosTau2|chr7 (21112713-21112989) | |
| 150-426, gnl|Hg17|chr1 (214864020-214864296) | |
| 150-426, gnl|Mm7|chr1 (186265277-186265006) | |
| 523-726, gnl|bosTau2|chr7 (21117876-21118079) | |
| 523-726, gnl|canFam2|chr38 (16394292-16394445) | |
| 523-726, gnl|danRer3|chr20 (53356871-53357024) | |
| 523-726, gnl|dasNov1|scaffold_182193 (892-739) | |
| 523-726, gnl|echTel1|scaffold_279773 (43763-43916) | |
| 523-726, gnl|fr1|chrUn (214922079-214921926) | |
| 523-726, gnl|galGal2|chr3 (15777857-15777704) | |
| 523-726, gnl|hg17|chr1 (214869167-214869320) | |
| 523-726, gnl|Hg17|chr1 (214869166-214869369) | |
| 523-726, gnl|loxAfr1|scaffold_6410 (33387-33234) | |
| 523-726, gnl|mm7|chr1 (186261719-186261566) | |
| 523-726, gnl|Mm7|chr1 (186261717-186261518) | |
| 523-726, gnl|monDom2|scaffold_13 (24100699-24100852) | |
| 523-726, gnl|oryCun1|scaffold_188589 (15213-15060) | |
| 523-726, gnl|panTro1|chr1 (198602940-198603093) | |
| 523-726, gnl|rheMac2|chr1 (152120598-152120445) | |
| 523-726, gnl|rn3|chr13 (103027596-103027443) | |
| 523-726, gnl|tetNig1|chrUn_random (32339524-32339371) | |
| 523-726, gnl|xenTro1|scaffold_39 (1717225-1717376) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 150-426, gnl|bosTau2|chr7 (21112713-21112989) | |
| 150-426, gnl|Hg17|chr1 (214864020-214864296) | |
| 150-426, gnl|Mm7|chr1 (186265277-186265006) | |
| 523-726, gnl|bosTau2|chr7 (21117876-21118079) | |
| 523-726, gnl|canFam2|chr38 (16394292-16394445) | |
| 523-726, gnl|danRer3|chr20 (53356871-53357024) | |
| 523-726, gnl|dasNov1|scaffold_182193 (892-739) | |
| 523-726, gnl|echTel1|scaffold_279773 (43763-43916) | |
| 523-726, gnl|fr1|chrUn (214922079-214921926) | |
| 523-726, gnl|galGal2|chr3 (15777857-15777704) | |
| 523-726, gnl|hg17|chr1 (214869167-214869320) | |
| 523-726, gnl|Hg17|chr1 (214869166-214869369) | |
| 523-726, gnl|loxAfr1|scaffold_6410 (33387-33234) | |
| 523-726, gnl|mm7|chr1 (186261719-186261566) | |
| 523-726, gnl|Mm7|chr1 (186261717-186261518) | |
| 523-726, gnl|monDom2|scaffold_13 (24100699-24100852) | |
| 523-726, gnl|oryCun1|scaffold_188589 (15213-15060) | |
| 523-726, gnl|panTro1|chr1 (198602940-198603093) | |
| 523-726, gnl|rheMac2|chr1 (152120598-152120445) | |
| 523-726, gnl|rn3|chr13 (103027596-103027443) | |
| 523-726, gnl|tetNig1|chrUn_random (32339524-32339371) | |
| 523-726, gnl|xenTro1|scaffold_39 (1717225-1717376) |
| Expressed library(ies): 22 entry(ies) | More info |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
| che (0.545256) | |
| cmu (0.372787) | |
| cut (0.339847) | |
| sme (0.305437) | |
| cte (0.29274) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| aor (0.195274) | |
| sto (0.179824) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| cki (0.165235) | |
| nco (0.161734) | |
| fco (0.157208) | |
| spl (0.143184) | |
| ste (0.135208) | |
| sug (0.127291) | |
| tra (0.123092) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| ldo (0.0970026) |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| che (0.545256) | |
| cmu (0.372787) | |
| cut (0.339847) | |
| sme (0.305437) | |
| cte (0.29274) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| aor (0.195274) | |
| sto (0.179824) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| cki (0.165235) | |
| nco (0.161734) | |
| fco (0.157208) | |
| spl (0.143184) | |
| ste (0.135208) | |
| sug (0.127291) | |
| tra (0.123092) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| ldo (0.0970026) |