Non-Coding RNA Search

Ss1.1-mAY1-MI-P-AY1-npy-h-02-0-UI.s1.3

Sequence:


               
               GCAGCAGGAGCTGGAGGCAGTGAGGAAGAAACTGGAAGAAGCAGCATCTCGGGCAGCAGA
AGAAGAAAAGAAACGCCTTCAGACTCAAGTGGAACTTCAGGCCAGATTCAGCACGGAGCT
GGAGCGGGAGAAGCTTATCAGGCAGCAGATGGAAGAGCAGGTTGCCCAGAAATCCTCTGA
ACTGGAACAGTATTTGCAGCGAGTCCGGGAGCTGGAAGACATGTACCTCAAGCTGCAGGA
GGCCCTCGAAGATGAGAGGCAGGCCCGGCAAGATGAAGAGACTGTGCGAAAGCTTCAGGC
CAGGTTGCTGGAGGAAGAGTCGTCCAAGAGGGCTGAACTGGAGAAGTGGCACTTGGAGCA
GCAGCAGGCTATTCGGACAACGGAAGCAGAGAAGCAGGAGCTGGAGAACCAGCGCGTCAT
CAAAGAGCAGGCCCTTCAGGAAGCCATGGAGCAGCTGCAGCAGCTCGAGCTGGAGCGGAA
ACAAGCACTGGAGCAGTACGAGGGGGTTAAAAAGAAGCTTGAGTTGGCGACGAATAAAAC
CAAGAGCTGGAAGGACAAAGTGGCCCAGCATGAAGGATTAATTCGATTGATAGAACCAGG
TTCAAAAAACCCTCACCTGATCACTAACTGGGGCCCTGCAGCTTTCACTCAGGCAGAGCT
TGAAGAGAGAGAGAAGAGCTGGAAAGGAAAGAAGACCACGGAGTGAGCAGAAGTCACGTC
ACTTATGTAGGTTCCAGTGTAGCTGGAAAGCTTTATGCTAAAGGCAAGAGGACCTGGCTT
TGCTGCTTCTAACTCTTCTTCCTCCAGCGCCTCCTATGGGCTCAGTATAGTAAAGAAGGC
TTTTTATTTATCTGCCTGCAAATCAGGGCTTACCTGAAAAGAACAAAAAAGGCAACCTCG
GCAAGCTCTTTCTTTTCCTCTCTCTCTGAAAACTTCAGCTTCTGAAGATGCCCCTTAGCT
CCTGCAGATTCTTGTCGGAAGGAGGCAGCGCACAGACAGTACAGTGGTGCCCGCATCCAT
CCGTCCGTCGCAGCCTGTGGCCAGGAGCGGGGAGGTGCTCAGGTCCCTGGGTATCAGAAC
CCCTGCAGGCTGGGGCAGTTGCTTTTTTGGCAGCTGTTTCCTCCTCCGAGTGATTGTTTC
TAAAGAGGCCGGTTTGCCTGCCATGGCCACGGTTGACCTGGAATGCCTCGGACCATTGCT
GCTCGGCTGGAGAAGCGCCTTCTCCAACACGTGGAGCCTGCTCTGAGTGGTTGCAATCTG
TGTGTTTGGTTGTGCAGGTTTCTCTCTAGTGCAGTGTGACTGATTGGCATCCTGGCTCCA
GCAGCACTATCTCAGAGAGGCAGAAGTCTTTTAAATAGTGCTTTGGCTGAGATAGATACT
TAGGAATCAAAGGACACAGAAGTGAACTAAGTAAATCCCCTTTGGAACGATGTTTTGATA
CTAACTGAATTCTTCCTAATATTTAAAGTGGTGTCAACTGTCAGGAGGCTGGCAGACCCT
TTGATTTTAGTTTTGTAGTTACTGTACAGAACGTTTCAGGAGTGTGTGAGCACTGGTCCT
CATCAGGCCTTTTCCTTCATAAATAGGGATTTGATCATTTCTAGGAATTACACATGAAAA
GTTTTAAAATGTATTTTTGTGACATGCTGTGTTGAGAGGGAACAAGTATTTATAATTTTT
CAAACATTTCTACCTAAATATTGTACAATGTAATATGCTGAACTTCCTTAATTTTTTGGC
TCATTTTCTAAGATATATTAAAAATCTTTTGTATGGGAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGCAGGAGCTGGAGGCAGTGAGGAAGAAACTGGAAGAAGCAGCATCTCGGGCAGCAGA
AGAAGAAAAGAAACGCCTTCAGACTCAAGTGGAACTTCAGGCCAGATTCAGCACGGAGCT
GGAGCGGGAGAAGCTTATCAGGCAGCAGATGGAAGAGCAGGTTGCCCAGAAATCCTCTGA
ACTGGAACAGTATTTGCAGCGAGTCCGGGAGCTGGAAGACATGTACCTCAAGCTGCAGGA
GGCCCTCGAAGATGAGAGGCAGGCCCGGCAAGATGAAGAGACTGTGCGAAAGCTTCAGGC
CAGGTTGCTGGAGGAAGAGTCGTCCAAGAGGGCTGAACTGGAGAAGTGGCACTTGGAGCA
GCAGCAGGCTATTCGGACAACGGAAGCAGAGAAGCAGGAGCTGGAGAACCAGCGCGTCAT
CAAAGAGCAGGCCCTTCAGGAAGCCATGGAGCAGCTGCAGCAGCTCGAGCTGGAGCGGAA
ACAAGCACTGGAGCAGTACGAGGGGGTTAAAAAGAAGCTTGAGTTGGCGACGAATAAAAC
CAAGAGCTGGAAGGACAAAGTGGCCCAGCATGAAGGATTAATTCGATTGATAGAACCAGG
TTCAAAAAACCCTCACCTGATCACTAACTGGGGCCCTGCAGCTTTCACTCAGGCAGAGCT
TGAAGAGAGAGAGAAGAGCTGGAAAGGAAAGAAGACCACGGAGTGAGCAGAAGTCACGTC
ACTTATGTAGGTTCCAGTGTAGCTGGAAAGCTTTATGCTAAAGGCAAGAGGACCTGGCTT
TGCTGCTTCTAACTCTTCTTCCTCCAGCGCCTCCTATGGGCTCAGTATAGTAAAGAAGGC
TTTTTATTTATCTGCCTGCAAATCAGGGCTTACCTGAAAAGAACAAAAAAGGCAACCTCG
GCAAGCTCTTTCTTTTCCTCTCTCTCTGAAAACTTCAGCTTCTGAAGATGCCCCTTAGCT
CCTGCAGATTCTTGTCGGAAGGAGGCAGCGCACAGACAGTACAGTGGTGCCCGCATCCAT
CCGTCCGTCGCAGCCTGTGGCCAGGAGCGGGGAGGTGCTCAGGTCCCTGGGTATCAGAAC
CCCTGCAGGCTGGGGCAGTTGCTTTTTTGGCAGCTGTTTCCTCCTCCGAGTGATTGTTTC
TAAAGAGGCCGGTTTGCCTGCCATGGCCACGGTTGACCTGGAATGCCTCGGACCATTGCT
GCTCGGCTGGAGAAGCGCCTTCTCCAACACGTGGAGCCTGCTCTGAGTGGTTGCAATCTG
TGTGTTTGGTTGTGCAGGTTTCTCTCTAGTGCAGTGTGACTGATTGGCATCCTGGCTCCA
GCAGCACTATCTCAGAGAGGCAGAAGTCTTTTAAATAGTGCTTTGGCTGAGATAGATACT
TAGGAATCAAAGGACACAGAAGTGAACTAAGTAAATCCCCTTTGGAACGATGTTTTGATA
CTAACTGAATTCTTCCTAATATTTAAAGTGGTGTCAACTGTCAGGAGGCTGGCAGACCCT
TTGATTTTAGTTTTGTAGTTACTGTACAGAACGTTTCAGGAGTGTGTGAGCACTGGTCCT
CATCAGGCCTTTTCCTTCATAAATAGGGATTTGATCATTTCTAGGAATTACACATGAAAA
GTTTTAAAATGTATTTTTGTGACATGCTGTGTTGAGAGGGAACAAGTATTTATAATTTTT
CAAACATTTCTACCTAAATATTGTACAATGTAATATGCTGAACTTCCTTAATTTTTTGGC
TCATTTTCTAAGATATATTAAAAATCTTTTGTATGGGAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9P061_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9P061_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1262-1375, - strand, RNAz p=0.701854

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1262-1375, - strand, RNAz p=0.701854

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               24-141, gnl|bosTau2|chr15 (29274981-29275098)
               

               
               24-141, gnl|Hg17|chr11 (9716331-9716448)
               

               
               24-141, gnl|Mm7|chr7 (106188521-106188643)
               


               
               301-503, gnl|bosTau2|chr15 (29282675-29282877)
               

               
               301-503, gnl|Hg17|chr11 (9725978-9726180)
               

               
               301-503, gnl|Mm7|chr7 (106194448-106194650)
               


               
               598-1007, gnl|bosTau2|chr15 (29284267-29284669)
               

               
               598-1007, gnl|Hg17|chr11 (9727985-9728731)
               


               
               1033-1776, gnl|bosTau2|chr15 (29284669-29285418)
               

               
               1033-1776, gnl|Hg17|chr11 (9728731-9731022)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               24-141, gnl|bosTau2|chr15 (29274981-29275098)
               

               
               24-141, gnl|Hg17|chr11 (9716331-9716448)
               

               
               24-141, gnl|Mm7|chr7 (106188521-106188643)
               


               
               301-503, gnl|bosTau2|chr15 (29282675-29282877)
               

               
               301-503, gnl|Hg17|chr11 (9725978-9726180)
               

               
               301-503, gnl|Mm7|chr7 (106194448-106194650)
               


               
               598-1007, gnl|bosTau2|chr15 (29284267-29284669)
               

               
               598-1007, gnl|Hg17|chr11 (9727985-9728731)
               


               
               1033-1776, gnl|bosTau2|chr15 (29284669-29285418)
               

               
               1033-1776, gnl|Hg17|chr11 (9728731-9731022)

Expressed library(ies): 18 entry(ies)

More info

Expressed library(ies): 18 entry(ies)

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               aor (0.781097)
               

               
               thg (0.633955)
               

               
               cbr (0.383926)
               

               
               sin (0.349895)
               

               
               lyg (0.266205)
               

               
               spc (0.226732)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               cty (0.10408)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.781097)
               

               
               thg (0.633955)
               

               
               cbr (0.383926)
               

               
               sin (0.349895)
               

               
               lyg (0.266205)
               

               
               spc (0.226732)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               cty (0.10408)

	24-141, gnl\|bosTau2\|chr15 (29274981-29275098)
	24-141, gnl\|Hg17\|chr11 (9716331-9716448)
	24-141, gnl\|Mm7\|chr7 (106188521-106188643)

	301-503, gnl\|bosTau2\|chr15 (29282675-29282877)
	301-503, gnl\|Hg17\|chr11 (9725978-9726180)
	301-503, gnl\|Mm7\|chr7 (106194448-106194650)

	598-1007, gnl\|bosTau2\|chr15 (29284267-29284669)
	598-1007, gnl\|Hg17\|chr11 (9727985-9728731)

	1033-1776, gnl\|bosTau2\|chr15 (29284669-29285418)
	1033-1776, gnl\|Hg17\|chr11 (9728731-9731022)

	aor (0.781097)
	thg (0.633955)
	cbr (0.383926)
	sin (0.349895)
	lyg (0.266205)
	spc (0.226732)
	nlu (0.191681)
	ill (0.175593)
	rec (0.17307)
	eye (0.170503)
	cut (0.169924)
	fco (0.157208)
	tbr (0.154178)
	lnt (0.142308)
	csk (0.140746)
	bla (0.124347)
	eru (0.120048)
	cty (0.10408)