Non-Coding RNA Search

Ss1.1-mAY1-MI-P-AY1-nqf-h-11-0-UI.s1.3

Sequence:


               
               CACCATTAACCGTTCTCCCCTCCAACCCTCCCCTGCAGCCTGTAGCCACCAATGTTTCAA
GAGGAGCCCCCGCCCCGTTCCTGCTGCTGTCTGGGTGCTACTGGGGAAACTGGCCATGGC
CTGCAAACTGGGAACCCCTTCCCCACCCCCACCCGCTCTCCTCTTCCATTCACTCTCCCC
CTTCTGAGCTCAGCCCCTGGAGATTGATCTGGATGGGGCAGGCCACCTGGCCCTCACCTC
TATGTCCCCACACCAGTGTGATCCGAGTCAGGTCCATGTCTTCTGCTCCATGGGATGAGA
TGAGGCCGTTGTGTCCCTCCCTACCTGGAGCTGTTTCCCAGCGCATTTGTCGGGGCCTCG
ACTGGCTCTTTCCATCTCCCGACACCCCTCTCCCCCTCCCCCGGGCATTCTAGACCTCTG
GGTTGGTTGGGATCAGGGTCATGAGTGGAAGGGATGGAAGCCTAGGTGGGCTTCTGGGGC
CTGGGAAGGGCAGTCTTCACATTGGGGTAGGGAGTGGACAGGAGGCTCTAGCATCTCCTT
GAGCTCCTGGCCCTTCCTCCCACACCTGTCATCCCAGCTGCCTAGATTCAGGGAAAGTGG
GATAGCTTTGGGGGGAGGGGCCCCCTTCCGCAAATCCTTCCTCATTGGCAATGCCCCTTC
TCCTTTGCTGACCCTGGGTGTCATGGGAATTGGAGTCTCTCAATCCCACGATTTGGGGGT
TTGCAGGTTCTTTGGGCCAAGGAGCTGAGATCTGAAGGCTTGACTTCACCCAGCTTGGGT
GGAAGTGTTGAGGAGTATCCACCCACCTTTAGATCTCAGACCAGAGATGGGATGCCCTGG
GGAGATCCTTAGCTGCCCTTTTTCCTCTCCCCACAGTGCTCAAGGCCAGCCTACAGTCCA
TATGTCACCCAGACATTAAGGAAAAGACACATTTTTTAGGAAATGTTTTTAATAAAAGAA
AATTACAAAAAAAAAAATTTTAAAGACCCCCCACCCCTTTGTGTGCCGCCCCCCCCACTC
TGCTCCTTTCTTCCCCAATGTTGCTCCCATTTCTGAGGTGCACTGGGAGGCTCCCCTTCT
GTTTGGGGCTTGATGACTTTTCTTTTTGTAGCTGAGGCTTTGGTGTTCCTTCTGGTGTCA
TTTCCCATCCACATACCCGCATCTGGTCCCCTCAGTGTCGTCACCAGATCAGATTTGTAA
CCCACCGAGAGGCCAGAGGGAATTAAGCGCCCTCTCCCAACCTCTTTCTAGTGGTCTCTC
TGCCTCTTCCGTCTCTTGTCTCTTTCACCCTTGCCCCTCTCCCTTGGGCTCTGATGAAAA
ATTGCTGACTGTAGCTTTGAAGTTTAGCTCTGAGAACCGTAGATGATTTCAGTTATAGGA
AAATAAAACCCATTGATTACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCATTAACCGTTCTCCCCTCCAACCCTCCCCTGCAGCCTGTAGCCACCAATGTTTCAA
GAGGAGCCCCCGCCCCGTTCCTGCTGCTGTCTGGGTGCTACTGGGGAAACTGGCCATGGC
CTGCAAACTGGGAACCCCTTCCCCACCCCCACCCGCTCTCCTCTTCCATTCACTCTCCCC
CTTCTGAGCTCAGCCCCTGGAGATTGATCTGGATGGGGCAGGCCACCTGGCCCTCACCTC
TATGTCCCCACACCAGTGTGATCCGAGTCAGGTCCATGTCTTCTGCTCCATGGGATGAGA
TGAGGCCGTTGTGTCCCTCCCTACCTGGAGCTGTTTCCCAGCGCATTTGTCGGGGCCTCG
ACTGGCTCTTTCCATCTCCCGACACCCCTCTCCCCCTCCCCCGGGCATTCTAGACCTCTG
GGTTGGTTGGGATCAGGGTCATGAGTGGAAGGGATGGAAGCCTAGGTGGGCTTCTGGGGC
CTGGGAAGGGCAGTCTTCACATTGGGGTAGGGAGTGGACAGGAGGCTCTAGCATCTCCTT
GAGCTCCTGGCCCTTCCTCCCACACCTGTCATCCCAGCTGCCTAGATTCAGGGAAAGTGG
GATAGCTTTGGGGGGAGGGGCCCCCTTCCGCAAATCCTTCCTCATTGGCAATGCCCCTTC
TCCTTTGCTGACCCTGGGTGTCATGGGAATTGGAGTCTCTCAATCCCACGATTTGGGGGT
TTGCAGGTTCTTTGGGCCAAGGAGCTGAGATCTGAAGGCTTGACTTCACCCAGCTTGGGT
GGAAGTGTTGAGGAGTATCCACCCACCTTTAGATCTCAGACCAGAGATGGGATGCCCTGG
GGAGATCCTTAGCTGCCCTTTTTCCTCTCCCCACAGTGCTCAAGGCCAGCCTACAGTCCA
TATGTCACCCAGACATTAAGGAAAAGACACATTTTTTAGGAAATGTTTTTAATAAAAGAA
AATTACAAAAAAAAAAATTTTAAAGACCCCCCACCCCTTTGTGTGCCGCCCCCCCCACTC
TGCTCCTTTCTTCCCCAATGTTGCTCCCATTTCTGAGGTGCACTGGGAGGCTCCCCTTCT
GTTTGGGGCTTGATGACTTTTCTTTTTGTAGCTGAGGCTTTGGTGTTCCTTCTGGTGTCA
TTTCCCATCCACATACCCGCATCTGGTCCCCTCAGTGTCGTCACCAGATCAGATTTGTAA
CCCACCGAGAGGCCAGAGGGAATTAAGCGCCCTCTCCCAACCTCTTTCTAGTGGTCTCTC
TGCCTCTTCCGTCTCTTGTCTCTTTCACCCTTGCCCCTCTCCCTTGGGCTCTGATGAAAA
ATTGCTGACTGTAGCTTTGAAGTTTAGCTCTGAGAACCGTAGATGATTTCAGTTATAGGA
AAATAAAACCCATTGATTACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               115-233, + strand, RNAz p=0.997928
               

               
               1126-1245, - strand, RNAz p=0.852142

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               115-233, + strand, RNAz p=0.997928
               

               
               1126-1245, - strand, RNAz p=0.852142

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of NM_138574, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_138574, +

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               37-627, gnl|bosTau2|chr23 (29185923-29185330)
               

               
               37-627, gnl|Hg17|chr6 (22678531-22679173)
               


               
               1046-1420, gnl|bosTau2|chr21 (19589674-19589326)
               

               
               1046-1420, gnl|Hg17|chr1 (153525332-153524972)
               

               
               1046-1420, gnl|Mm7|chrX (75016954-75016629)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               37-627, gnl|bosTau2|chr23 (29185923-29185330)
               

               
               37-627, gnl|Hg17|chr6 (22678531-22679173)
               


               
               1046-1420, gnl|bosTau2|chr21 (19589674-19589326)
               

               
               1046-1420, gnl|Hg17|chr1 (153525332-153524972)
               

               
               1046-1420, gnl|Mm7|chrX (75016954-75016629)

Expressed library(ies): 29 entry(ies)

More info

Expressed library(ies): 29 entry(ies)

Help | Less info


               
               nbm (0.397298)
               

               
               cly (0.361925)
               

               
               fty (0.351679)
               

               
               ill (0.351185)
               

               
               lnt (0.284616)
               

               
               che (0.272628)
               

               
               nmm (0.265604)
               

               
               ese (0.253004)
               

               
               mas (0.210305)
               

               
               cty (0.20816)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 29 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nbm (0.397298)
               

               
               cly (0.361925)
               

               
               fty (0.351679)
               

               
               ill (0.351185)
               

               
               lnt (0.284616)
               

               
               che (0.272628)
               

               
               nmm (0.265604)
               

               
               ese (0.253004)
               

               
               mas (0.210305)
               

               
               cty (0.20816)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	115-233, + strand, RNAz p=0.997928
	1126-1245, - strand, RNAz p=0.852142

	37-627, gnl\|bosTau2\|chr23 (29185923-29185330)
	37-627, gnl\|Hg17\|chr6 (22678531-22679173)

	1046-1420, gnl\|bosTau2\|chr21 (19589674-19589326)
	1046-1420, gnl\|Hg17\|chr1 (153525332-153524972)
	1046-1420, gnl\|Mm7\|chrX (75016954-75016629)

	nbm (0.397298)
	cly (0.361925)
	fty (0.351679)
	ill (0.351185)
	lnt (0.284616)
	che (0.272628)
	nmm (0.265604)
	ese (0.253004)
	mas (0.210305)
	cty (0.20816)
	eje (0.197668)
	col (0.195008)
	duo (0.172801)
	cut (0.169924)
	cki (0.165235)
	nco (0.161734)
	cli (0.152812)
	cag (0.151194)
	spl (0.143184)
	cst (0.140036)
	ssp (0.13552)
	ute (0.132784)
	cov (0.132153)
	eru (0.120048)
	med (0.116252)
	ecc (0.115035)
	jca (0.11396)
	jej (0.0989218)
	ldo (0.0970026)