Non-Coding RNA Search

Ss1.1-mAY1-MI-P-AY1-nqg-b-07-0-UI.s1.3

Sequence:


               
               GTTTTTAAAGGGATAATTTTTTAAATTAAATTATGGGGGAATGACATAGTTTCTGCTTAA
GGAAATAATTGTGCCACATATTTAACTGCAAAATGTATTTCTGCTTTCAGCTTTTGCCAT
TTGAGCATTCAAAGCAGTTGTTGATAACCTGTCACAATAAATTCACCGAGGCAGATGATT
CCTCTTGTAATAAAGAATTCTTTTTCTAAATATTATTTAGAAACTTTAAATGAGAAAACT
CTTGAGGACAGGGAGCCACTTGTATAAAATGTACCTTTTAGGCTTTTTTTTTCCTGGCCT
GTTTAAATGAAAAGCCTCACTGAAAATCTGTTTTGACACAGTTTCAATGTATCAATCAAT
CTGTTGTGATTAGTATGTGCAGTTTCTGTTTTTGTTTTAAATACCCTTTGGTTCTTCTCA
ATTTCCAAAGATACATTTTATTATGCTAAGAAGTACAAAGCAGTTCGTCTTATCAGATGA
GCCTCAGGCATTATGTTTGTTTAAGAAATGTTCTCAGTATGTGTTTCATGTATAATTATT
TCCCAGAAGCTGGAGAAAAGTATTTCAGCACAGTCAGGATTATGATTTCTGTGCATTAAC
AGTGGAGTTGATTTGTGCCATGTACAAATTCTTCTTAGCTGTAAACACAACTTGACTGGG
GCCAGTGGGAGGGGGTTGTTTATAATAAATGTTGGGGGAGAGTTGTAATAAATGCCTGTG
TCTATAAGAATGCAAGGAAGGCTGGAGCAAGATAGGGTGGGGGTATGTATTTATAAGTAA
ATAAAATATGTACTACTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTTAAAGGGATAATTTTTTAAATTAAATTATGGGGGAATGACATAGTTTCTGCTTAA
GGAAATAATTGTGCCACATATTTAACTGCAAAATGTATTTCTGCTTTCAGCTTTTGCCAT
TTGAGCATTCAAAGCAGTTGTTGATAACCTGTCACAATAAATTCACCGAGGCAGATGATT
CCTCTTGTAATAAAGAATTCTTTTTCTAAATATTATTTAGAAACTTTAAATGAGAAAACT
CTTGAGGACAGGGAGCCACTTGTATAAAATGTACCTTTTAGGCTTTTTTTTTCCTGGCCT
GTTTAAATGAAAAGCCTCACTGAAAATCTGTTTTGACACAGTTTCAATGTATCAATCAAT
CTGTTGTGATTAGTATGTGCAGTTTCTGTTTTTGTTTTAAATACCCTTTGGTTCTTCTCA
ATTTCCAAAGATACATTTTATTATGCTAAGAAGTACAAAGCAGTTCGTCTTATCAGATGA
GCCTCAGGCATTATGTTTGTTTAAGAAATGTTCTCAGTATGTGTTTCATGTATAATTATT
TCCCAGAAGCTGGAGAAAAGTATTTCAGCACAGTCAGGATTATGATTTCTGTGCATTAAC
AGTGGAGTTGATTTGTGCCATGTACAAATTCTTCTTAGCTGTAAACACAACTTGACTGGG
GCCAGTGGGAGGGGGTTGTTTATAATAAATGTTGGGGGAGAGTTGTAATAAATGCCTGTG
TCTATAAGAATGCAAGGAAGGCTGGAGCAAGATAGGGTGGGGGTATGTATTTATAAGTAA
ATAAAATATGTACTACTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               2-659, gnl|bosTau2|chr5 (29089423-29088760)
               

               
               2-659, gnl|Hg17|chr12 (67447135-67448234)
               

               
               2-659, gnl|Mm7|chr10 (117246155-117245174)
               


               
               680-801, gnl|bosTau2|chr5 (29088759-29088629)
               

               
               680-801, gnl|Hg17|chr12 (67448235-67448490)
               

               
               680-801, gnl|Mm7|chr10 (117245173-117245052)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-659, gnl|bosTau2|chr5 (29089423-29088760)
               

               
               2-659, gnl|Hg17|chr12 (67447135-67448234)
               

               
               2-659, gnl|Mm7|chr10 (117246155-117245174)
               


               
               680-801, gnl|bosTau2|chr5 (29088759-29088629)
               

               
               680-801, gnl|Hg17|chr12 (67448235-67448490)
               

               
               680-801, gnl|Mm7|chr10 (117245173-117245052)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               fco (0.157208)
               

               
               lnt (0.142308)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.157208)
               

               
               lnt (0.142308)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

	2-659, gnl\|bosTau2\|chr5 (29089423-29088760)
	2-659, gnl\|Hg17\|chr12 (67447135-67448234)
	2-659, gnl\|Mm7\|chr10 (117246155-117245174)

	680-801, gnl\|bosTau2\|chr5 (29088759-29088629)
	680-801, gnl\|Hg17\|chr12 (67448235-67448490)
	680-801, gnl\|Mm7\|chr10 (117245173-117245052)

	fco (0.157208)
	lnt (0.142308)
	kid (0.129735)
	bla (0.124347)
	tra (0.123092)
	ebs (0.118301)
	spc (0.113366)