Non-Coding RNA Search

Ss1.1-mAY1-MI-P-AY1-nqh-e-09-0-UI.s1.3

Sequence:


               
               GGCTGTCCAAGGACCTGTTGGTACAGATTTCAAGCCTTTAAATAGTACCCCTGCAACAAC
TACAGAACCCCCAAAGCCTACATTCCCTGCATATACCCAGTCTACAGCTTCAACCACTAG
TACAACAAATAGCACTGCAGCTAAACCAGCAGCTTCAATAACAAGTAAGCCTGCTACACT
CACCACAACCAGTGCAACCAGTAAGTTGATCCATCCAGATGAGGATATATCACTGGAAGA
GAGAAGAGCACAGTTACCTAAATACCAACGTAATCTTCCTCGACCAGGACAGGCTCCTAT
TGGTAATCCACCTGTTGGCCCAATTGGGGGTATGATGCCACCACAGCCAGGCATCCCACA
GCAACAAGGAATGAGACCCCCAATGCCGCCTCATGGTCAGTATGGTGGTCATCATCAAGG
CATGCCAGGTTACCTTCCTGGTGCTATGCCACCATATGGGCAGGGACCGCCAATGGTACC
CCCTTACCAAGGTGGGCCTCCTCGACCTCCGATGGGAATGAGACCTCCTGTAATGTCGCA
AGGTGGCCGTTACTGATCTTACTTCATCCAGTCTAATAGGTTTGGAGATTAAACCTTTTC
TCAACTTGTGCTGTTTATATAGCCAAGCTTCCGTCAATAAGGCTTCATTGTGACTTTAAC
AAACATTATCTTCCCACATACCAGGAACTATTGGACATTTATTTTACATGGGAAAAATTA
TTTGGAATAATAAAGCAGGAACTTTTCCTGAAGTTGCAATTTATACTGTATGGCTTCTTT
TTCATGTTTCATCTAGGTTTTTAGAAGTGAAGTATAGTAAATTTGGTTCGTTATATTGTG
AAGGCGCTGGAATTACATGAACATACCACCTTAATAAAGGCAAGTTCTGTAAGCTTACAT
TGCTATTTGTAAAGTTATGCCTTCACAGCATTTCAGATGCTGTTGGACTTCATGTCCCCA
ACCTAGCTTGGTGAGGGCTGTAACTGTCTCCAAGTACCTGTACATTGGAAGTCTGAATGT
GTAACGATATTTAATGTATTTAGAGTTCCTCATGTTGCAGGGTTTAAGAAATCTGACCCA
CCAAGGTCATGTGACTTTTCTGTACTGTTAAACTTCGTTGTAATAAAATGAGAGAAAAGT
TAAAAAAAAAAAATTCATAACCCAGCTGTGGACCACTGCCTGAAAGGTTTGTACAGATGC
ATGCCACAGTAGATGTCCACATAATAAAATTCATAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTGTCCAAGGACCTGTTGGTACAGATTTCAAGCCTTTAAATAGTACCCCTGCAACAAC
TACAGAACCCCCAAAGCCTACATTCCCTGCATATACCCAGTCTACAGCTTCAACCACTAG
TACAACAAATAGCACTGCAGCTAAACCAGCAGCTTCAATAACAAGTAAGCCTGCTACACT
CACCACAACCAGTGCAACCAGTAAGTTGATCCATCCAGATGAGGATATATCACTGGAAGA
GAGAAGAGCACAGTTACCTAAATACCAACGTAATCTTCCTCGACCAGGACAGGCTCCTAT
TGGTAATCCACCTGTTGGCCCAATTGGGGGTATGATGCCACCACAGCCAGGCATCCCACA
GCAACAAGGAATGAGACCCCCAATGCCGCCTCATGGTCAGTATGGTGGTCATCATCAAGG
CATGCCAGGTTACCTTCCTGGTGCTATGCCACCATATGGGCAGGGACCGCCAATGGTACC
CCCTTACCAAGGTGGGCCTCCTCGACCTCCGATGGGAATGAGACCTCCTGTAATGTCGCA
AGGTGGCCGTTACTGATCTTACTTCATCCAGTCTAATAGGTTTGGAGATTAAACCTTTTC
TCAACTTGTGCTGTTTATATAGCCAAGCTTCCGTCAATAAGGCTTCATTGTGACTTTAAC
AAACATTATCTTCCCACATACCAGGAACTATTGGACATTTATTTTACATGGGAAAAATTA
TTTGGAATAATAAAGCAGGAACTTTTCCTGAAGTTGCAATTTATACTGTATGGCTTCTTT
TTCATGTTTCATCTAGGTTTTTAGAAGTGAAGTATAGTAAATTTGGTTCGTTATATTGTG
AAGGCGCTGGAATTACATGAACATACCACCTTAATAAAGGCAAGTTCTGTAAGCTTACAT
TGCTATTTGTAAAGTTATGCCTTCACAGCATTTCAGATGCTGTTGGACTTCATGTCCCCA
ACCTAGCTTGGTGAGGGCTGTAACTGTCTCCAAGTACCTGTACATTGGAAGTCTGAATGT
GTAACGATATTTAATGTATTTAGAGTTCCTCATGTTGCAGGGTTTAAGAAATCTGACCCA
CCAAGGTCATGTGACTTTTCTGTACTGTTAAACTTCGTTGTAATAAAATGAGAGAAAAGT
TAAAAAAAAAAAATTCATAACCCAGCTGTGGACCACTGCCTGAAAGGTTTGTACAGATGC
ATGCCACAGTAGATGTCCACATAATAAAATTCATAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8N395_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8N395_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               78-197, - strand, RNAz p=0.725998

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               78-197, - strand, RNAz p=0.725998

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-236, gnl|bosTau2|chr19 (12515794-12516028)
               

               
               2-236, gnl|Hg17|chr17 (27718913-27719147)
               

               
               2-236, gnl|Mm7|chr11 (80475870-80476107)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-236, gnl|bosTau2|chr19 (12515794-12516028)
               

               
               2-236, gnl|Hg17|chr17 (27718913-27719147)
               

               
               2-236, gnl|Mm7|chr11 (80475870-80476107)

Expressed library(ies): 25 entry(ies)

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Expressed library(ies): 25 entry(ies)

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               cte (0.29274)
               

               
               lin (0.291206)
               

               
               ste (0.270416)
               

               
               pgl (0.236967)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               lin (0.291206)
               

               
               ste (0.270416)
               

               
               pgl (0.236967)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               fco (0.157208)
               

               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	2-236, gnl\|bosTau2\|chr19 (12515794-12516028)
	2-236, gnl\|Hg17\|chr17 (27718913-27719147)
	2-236, gnl\|Mm7\|chr11 (80475870-80476107)

	cte (0.29274)
	lin (0.291206)
	ste (0.270416)
	pgl (0.236967)
	ebs (0.236602)
	ecc (0.23007)
	fcc (0.197785)
	aor (0.195274)
	col (0.195008)
	nlu (0.191681)
	nep (0.183925)
	fco (0.157208)
	fat (0.147427)
	csk (0.140746)
	nca (0.136874)
	pla (0.133672)
	lyg (0.133103)
	ute (0.132784)
	ova (0.129132)
	ret (0.128733)
	bla (0.124347)
	tra (0.123092)
	spc (0.113366)
	cty (0.10408)
	nbm (0.0993246)