Ss1.1-mAY1-MI-P-AY1-nqh-h-03-0-UI.s1.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGCCGCGCGAGTACAAGGCGGGCGACCTGGTCTTCGCCAAAATGAAGGGCTACCCGCAC TGGCCGGCCCGGATTGACGAACTCCCAGAGGGAGCTGTGAAACCTCCAGCAAATAAGTAT CCTATCTTCTTTTTTGGCACCCATGAAACTGCATTTCTAGGTCCCAAAGACCTTTTCCCT TATAAGGAATACAAAGACAAGTTTGGGAAGTCAAACAAACGGAAAGGATTTAATGAAGGA TTATGGGAAATAGAAAATAACCCAGGAGTAAAGTTTACTGGATACCAGGCAATTCAGCAA CAGAGCTCTTCAGAAACTGAAGGAGAAGGCGGAAATACTGCAGATGCAAGCAGTGAGGAA GAAGGTGATAGAGTAGAAGAAGATGGAAAAGGCAAAAGAAAGAATGAAAAAGCAGGCTCA AAACGGAAAAAGTCATATACTTCAAAGAAATCCTCTAAACAGTCCCGGAAATCTCCAGGA GATGAGGATGACAAGGACTGCAAAGAAGAGGAAAACAAAAGCAGCTCTGAGGGTGGAGAT GCCGGCAATGACACAAGAAACACAACTTCAGACTTGCAAAAAACCAGTGAAGGGACCTAA CTACCATAATGAATGCTGCATATTAAGAAAACCACAAGAAGATTATACGTTTGGTTGTCT AATATTCTTGGATTTGATATGAAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGCCGCGCGAGTACAAGGCGGGCGACCTGGTCTTCGCCAAAATGAAGGGCTACCCGCAC TGGCCGGCCCGGATTGACGAACTCCCAGAGGGAGCTGTGAAACCTCCAGCAAATAAGTAT CCTATCTTCTTTTTTGGCACCCATGAAACTGCATTTCTAGGTCCCAAAGACCTTTTCCCT TATAAGGAATACAAAGACAAGTTTGGGAAGTCAAACAAACGGAAAGGATTTAATGAAGGA TTATGGGAAATAGAAAATAACCCAGGAGTAAAGTTTACTGGATACCAGGCAATTCAGCAA CAGAGCTCTTCAGAAACTGAAGGAGAAGGCGGAAATACTGCAGATGCAAGCAGTGAGGAA GAAGGTGATAGAGTAGAAGAAGATGGAAAAGGCAAAAGAAAGAATGAAAAAGCAGGCTCA AAACGGAAAAAGTCATATACTTCAAAGAAATCCTCTAAACAGTCCCGGAAATCTCCAGGA GATGAGGATGACAAGGACTGCAAAGAAGAGGAAAACAAAAGCAGCTCTGAGGGTGGAGAT GCCGGCAATGACACAAGAAACACAACTTCAGACTTGCAAAAAACCAGTGAAGGGACCTAA CTACCATAATGAATGCTGCATATTAAGAAAACCACAAGAAGATTATACGTTTGGTTGTCT AATATTCTTGGATTTGATATGAAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 150-268, + strand, RNAz p=0.892964 | |
| 446-554, + strand, RNAz p=0.996411 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 150-268, + strand, RNAz p=0.892964 | |
| 446-554, + strand, RNAz p=0.996411 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 150-289, gnl|bosTau2|chr21 (18079938-18080077) | |
| 150-289, gnl|canFam2|chr3 (57786514-57786681) | |
| 150-289, gnl|danRer3|chr22 (18494376-18494232) | |
| 150-289, gnl|dasNov1|scaffold_19558 (40355-40188) | |
| 150-289, gnl|echTel1|scaffold_40041 (825-991) | |
| 150-289, gnl|fr1|chrUn (220589581-220589433) | |
| 150-289, gnl|galGal2|chr10 (11840165-11840313) | |
| 150-289, gnl|hg17|chr15 (81617656-81617823) | |
| 150-289, gnl|Hg17|chr15 (81617797-81617658) | |
| 150-289, gnl|loxAfr1|scaffold_2905 (127971-128137) | |
| 150-289, gnl|mm7|chr7 (77773570-77773736) | |
| 150-289, gnl|Mm7|chr7 (77773711-77773572) | |
| 150-289, gnl|monDom2|scaffold_45 (1999835-1999994) | |
| 150-289, gnl|oryCun1|scaffold_171775 (46162-45995) | |
| 150-289, gnl|panTro1|chr16 (82420743-82420910) | |
| 150-289, gnl|rheMac2|chr7 (63372567-63372400) | |
| 150-289, gnl|rn3|chr1 (138193121-138193287) | |
| 150-289, gnl|tetNig1|chrUn_random (32885500-32885653) | |
| 150-289, gnl|xenTro1|scaffold_613 (118347-118182) | |
| 446-594, gnl|bosTau2|chr21 (18087009-18087157) | |
| 446-594, gnl|canFam2|chr3 (57782210-57782420) | |
| 446-594, gnl|dasNov1|scaffold_19558 (44385-44174) | |
| 446-594, gnl|echTel1|scaffold_288844 (37989-38200) | |
| 446-594, gnl|galGal2|chr10 (11836838-11837047) | |
| 446-594, gnl|hg17|chr15 (81610963-81611174) | |
| 446-594, gnl|Hg17|chr15 (81611119-81610971) | |
| 446-594, gnl|loxAfr1|scaffold_2905 (122964-123177) | |
| 446-594, gnl|mm7|chr7 (77767079-77767290) | |
| 446-594, gnl|Mm7|chr7 (77767235-77767087) | |
| 446-594, gnl|monDom2|scaffold_45 (1995454-1995666) | |
| 446-594, gnl|oryCun1|scaffold_171775 (48958-48748) | |
| 446-594, gnl|panTro1|chr16 (82414054-82414265) | |
| 446-594, gnl|rheMac2|chr7 (63378712-63378501) | |
| 446-594, gnl|rn3|chr1 (138186845-138187056) | |
| 446-594, gnl|xenTro1|scaffold_613 (120873-120669) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 150-289, gnl|bosTau2|chr21 (18079938-18080077) | |
| 150-289, gnl|canFam2|chr3 (57786514-57786681) | |
| 150-289, gnl|danRer3|chr22 (18494376-18494232) | |
| 150-289, gnl|dasNov1|scaffold_19558 (40355-40188) | |
| 150-289, gnl|echTel1|scaffold_40041 (825-991) | |
| 150-289, gnl|fr1|chrUn (220589581-220589433) | |
| 150-289, gnl|galGal2|chr10 (11840165-11840313) | |
| 150-289, gnl|hg17|chr15 (81617656-81617823) | |
| 150-289, gnl|Hg17|chr15 (81617797-81617658) | |
| 150-289, gnl|loxAfr1|scaffold_2905 (127971-128137) | |
| 150-289, gnl|mm7|chr7 (77773570-77773736) | |
| 150-289, gnl|Mm7|chr7 (77773711-77773572) | |
| 150-289, gnl|monDom2|scaffold_45 (1999835-1999994) | |
| 150-289, gnl|oryCun1|scaffold_171775 (46162-45995) | |
| 150-289, gnl|panTro1|chr16 (82420743-82420910) | |
| 150-289, gnl|rheMac2|chr7 (63372567-63372400) | |
| 150-289, gnl|rn3|chr1 (138193121-138193287) | |
| 150-289, gnl|tetNig1|chrUn_random (32885500-32885653) | |
| 150-289, gnl|xenTro1|scaffold_613 (118347-118182) | |
| 446-594, gnl|bosTau2|chr21 (18087009-18087157) | |
| 446-594, gnl|canFam2|chr3 (57782210-57782420) | |
| 446-594, gnl|dasNov1|scaffold_19558 (44385-44174) | |
| 446-594, gnl|echTel1|scaffold_288844 (37989-38200) | |
| 446-594, gnl|galGal2|chr10 (11836838-11837047) | |
| 446-594, gnl|hg17|chr15 (81610963-81611174) | |
| 446-594, gnl|Hg17|chr15 (81611119-81610971) | |
| 446-594, gnl|loxAfr1|scaffold_2905 (122964-123177) | |
| 446-594, gnl|mm7|chr7 (77767079-77767290) | |
| 446-594, gnl|Mm7|chr7 (77767235-77767087) | |
| 446-594, gnl|monDom2|scaffold_45 (1995454-1995666) | |
| 446-594, gnl|oryCun1|scaffold_171775 (48958-48748) | |
| 446-594, gnl|panTro1|chr16 (82414054-82414265) | |
| 446-594, gnl|rheMac2|chr7 (63378712-63378501) | |
| 446-594, gnl|rn3|chr1 (138186845-138187056) | |
| 446-594, gnl|xenTro1|scaffold_613 (120873-120669) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.229305) | |
| pgl (0.118483) | |
| ldo (0.0970026) |