Non-Coding RNA Search

Ss1.1-mAY1-MI-P-AY1-nqj-a-06-0-UI.s1.3

Sequence:


               
               GTTCCTGGGGACCCAAGCAGCCTGTGATGGCTGTCCTGTTGGGTAGCATCCAGCCCACCT
CCTTTCCCAGCCTTGCCCATTGNTGAGGGTCCCCAGGTCTCCCCTGAGACCCCTCCCAGG
GAGATGGAACAGGGGCCCTGGGCTCTCTGGGCCAAGCAGCAGGGACTGAGGGTCCACCCC
AGGTGGGTGAGACCACATGGACAGTTGGGCAGCGCCCTCCTTTGAGCTGCAGGCTGGGCA
GGAGCAGGGAGGGGTTGCCAGCCCCAGCGTGCCTCCCCAAGGAGGCTCCCAGCCAAGTGG
GCCTCAGCAGCACAGCTGCCCCCCCACCCCCAGCCCTGCACACAACTGGCCCAAGCCCCT
GGCAGTCACTCCTCTCACTGATGGCCTGGCCTGGTTTGGAGTTACATTTTGATGCCATGA
AGATACTTTGTTTATATATAATGTTTATATATTTTAAAGATTTGTGCCAAGAGAGTATAT
TTAATAAAAATTAAAATGACTTTTTCTCTTGAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCCTGGGGACCCAAGCAGCCTGTGATGGCTGTCCTGTTGGGTAGCATCCAGCCCACCT
CCTTTCCCAGCCTTGCCCATTGNTGAGGGTCCCCAGGTCTCCCCTGAGACCCCTCCCAGG
GAGATGGAACAGGGGCCCTGGGCTCTCTGGGCCAAGCAGCAGGGACTGAGGGTCCACCCC
AGGTGGGTGAGACCACATGGACAGTTGGGCAGCGCCCTCCTTTGAGCTGCAGGCTGGGCA
GGAGCAGGGAGGGGTTGCCAGCCCCAGCGTGCCTCCCCAAGGAGGCTCCCAGCCAAGTGG
GCCTCAGCAGCACAGCTGCCCCCCCACCCCCAGCCCTGCACACAACTGGCCCAAGCCCCT
GGCAGTCACTCCTCTCACTGATGGCCTGGCCTGGTTTGGAGTTACATTTTGATGCCATGA
AGATACTTTGTTTATATATAATGTTTATATATTTTAAAGATTTGTGCCAAGAGAGTATAT
TTAATAAAAATTAAAATGACTTTTTCTCTTGAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               30-146, - strand, RNAz p=0.806675
               

               
               148-253, - strand, RNAz p=0.999098
               

               
               253-481, + strand, RNAz p=0.847531

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               30-146, - strand, RNAz p=0.806675
               

               
               148-253, - strand, RNAz p=0.999098
               

               
               253-481, + strand, RNAz p=0.847531

Similar Transcript(s): 5 entry(ies)

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Similar Transcript(s): 5 entry(ies)

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               170-253, 1240385 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN286294.1|), 
blast E-value=0.000000000000007, identity=89.29% 
               

               
               170-253, 1368138 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN535125.1|), 
blast E-value=0.000000000000007, identity=89.29% 
               

               
               170-253, LB02721.CR_C12 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|DV891687.1|), 
blast E-value=0.000000000000007, identity=89.29% 
               

               
               170-253, LB02721.CR_F14 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|DV891742.1|), 
blast E-value=0.000000000000007, identity=89.29% 
               

               
               170-253, LB03077.CR_D19 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE384833.1|), 
blast E-value=0.000000000000007, identity=89.29%

Similar Transcript(s): 5 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               170-253, 1240385 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN286294.1|), 
blast E-value=0.000000000000007, identity=89.29% 
               

               
               170-253, 1368138 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN535125.1|), 
blast E-value=0.000000000000007, identity=89.29% 
               

               
               170-253, LB02721.CR_C12 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|DV891687.1|), 
blast E-value=0.000000000000007, identity=89.29% 
               

               
               170-253, LB02721.CR_F14 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|DV891742.1|), 
blast E-value=0.000000000000007, identity=89.29% 
               

               
               170-253, LB03077.CR_D19 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE384833.1|), 
blast E-value=0.000000000000007, identity=89.29%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AF521885, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AF521885, +

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               30-509, gnl|bosTau2|chr7 (2569732-2570201)
               

               
               30-509, gnl|canFam2|chr20 (47047144-47046745)
               

               
               30-509, gnl|echTel1|scaffold_310659 (38304-37997)
               

               
               30-509, gnl|hg17|chr19 (19084095-19084553)
               

               
               30-509, gnl|Hg17|chr19 (19084224-19084700)
               

               
               30-509, gnl|mm7|chr8 (68640081-68639683)
               

               
               30-509, gnl|Mm7|chr8 (68639946-68639543)
               

               
               30-509, gnl|panTro1|chr20 (20157171-20157629)
               

               
               30-509, gnl|rheMac2|chr19 (18748204-18748662)
               

               
               30-509, gnl|rn3|chr16 (19719514-19719894)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               30-509, gnl|bosTau2|chr7 (2569732-2570201)
               

               
               30-509, gnl|canFam2|chr20 (47047144-47046745)
               

               
               30-509, gnl|echTel1|scaffold_310659 (38304-37997)
               

               
               30-509, gnl|hg17|chr19 (19084095-19084553)
               

               
               30-509, gnl|Hg17|chr19 (19084224-19084700)
               

               
               30-509, gnl|mm7|chr8 (68640081-68639683)
               

               
               30-509, gnl|Mm7|chr8 (68639946-68639543)
               

               
               30-509, gnl|panTro1|chr20 (20157171-20157629)
               

               
               30-509, gnl|rheMac2|chr19 (18748204-18748662)
               

               
               30-509, gnl|rn3|chr16 (19719514-19719894)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               col (0.195008)
               

               
               cag (0.151194)
               

               
               eru (0.120048)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               cag (0.151194)
               

               
               eru (0.120048)

	30-146, - strand, RNAz p=0.806675
	148-253, - strand, RNAz p=0.999098
	253-481, + strand, RNAz p=0.847531

	170-253, 1240385 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN286294.1\|), blast E-value=0.000000000000007, identity=89.29%
	170-253, 1368138 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN535125.1\|), blast E-value=0.000000000000007, identity=89.29%
	170-253, LB02721.CR_C12 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb\|DV891687.1\|), blast E-value=0.000000000000007, identity=89.29%
	170-253, LB02721.CR_F14 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb\|DV891742.1\|), blast E-value=0.000000000000007, identity=89.29%
	170-253, LB03077.CR_D19 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb\|EE384833.1\|), blast E-value=0.000000000000007, identity=89.29%

	30-509, gnl\|bosTau2\|chr7 (2569732-2570201)
	30-509, gnl\|canFam2\|chr20 (47047144-47046745)
	30-509, gnl\|echTel1\|scaffold_310659 (38304-37997)
	30-509, gnl\|hg17\|chr19 (19084095-19084553)
	30-509, gnl\|Hg17\|chr19 (19084224-19084700)
	30-509, gnl\|mm7\|chr8 (68640081-68639683)
	30-509, gnl\|Mm7\|chr8 (68639946-68639543)
	30-509, gnl\|panTro1\|chr20 (20157171-20157629)
	30-509, gnl\|rheMac2\|chr19 (18748204-18748662)
	30-509, gnl\|rn3\|chr16 (19719514-19719894)