Non-Coding RNA Search

Ss1.1-mAY1-MI-P-AY1-nqj-e-07-0-UI.s1.3

Sequence:


               
               TCCAGTCTCCCGGTGGGGAGGGTGGGATGCCAGGGTGTGCTTGAATATTTATCATATCCT
TGCCCTTGTGTGCTTGTTAGAGAGAAAGAGGGTTATGGAGAAGACATATTATTTAAACTT
GTTCATAGTGTTCCTTTGTGGTCTGTGTGGTTGCATCTCAGGACTCCCGGCCACTTGTCG
CCTGTGGGGTGGCAAGCGTGATGGGGCCCCACACTGCCACCTGGTGGCTGCCTGAACCCC
ATTGCTCCTCTCTTTTCCTTGTTTTTCCACTTGATGGAGGAGGACCCCTGCCAGGATTAT
TCAACTTCAGCCCACTTGAGGGACCAAAGGGATGGAGGGGCAGGGTTGAAGGGAGACAGA
GTTGTTTCCAATCTTTCCAATATATTTAGGAGCAGGCGTGCAAGGGGCTACATGACCTAG
CAGGACAGAACTTTCCCCAATCATAGGGTGACTCACAGCCGCCCTGGTGACTCATTTCAA
TGTGTCATTTCCGGCTGCTGTGTGTGAGCAGTGGACACGTGAGAGAGGGAGAGAAAATGA
CAGAGAATGAGAGAGACAGCAAGTTCGGGCTCCACTACCCCCATTAGATAATCTTTCTGC
AAACCAGCTCGCAGGAGGTTACGGCATGCAGACCAATTTATTGAAGAATTGCACAGAGAG
GTTGAATGAATGTAACTAATAGAACTCCCACCATCCCACCATGCCCTTCAGTGAAAAATG
TTCGTTCCTGGCATTTTTTTTTTCTTTTTTCATTATGCACTGGACAATGACAGCCACACA
CGTACCCCCGAGGATACCCAAATGTGGGGTCCAGCGTTCTTAAAATTGTGTTTTCTATGC
TTTTTCACTTTTGATATAGAAGCAAGTTAAAAAAAAAGTTTTTAAAAAAATAATAAATAA
ACACAAAAAAAGAATAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCAGTCTCCCGGTGGGGAGGGTGGGATGCCAGGGTGTGCTTGAATATTTATCATATCCT
TGCCCTTGTGTGCTTGTTAGAGAGAAAGAGGGTTATGGAGAAGACATATTATTTAAACTT
GTTCATAGTGTTCCTTTGTGGTCTGTGTGGTTGCATCTCAGGACTCCCGGCCACTTGTCG
CCTGTGGGGTGGCAAGCGTGATGGGGCCCCACACTGCCACCTGGTGGCTGCCTGAACCCC
ATTGCTCCTCTCTTTTCCTTGTTTTTCCACTTGATGGAGGAGGACCCCTGCCAGGATTAT
TCAACTTCAGCCCACTTGAGGGACCAAAGGGATGGAGGGGCAGGGTTGAAGGGAGACAGA
GTTGTTTCCAATCTTTCCAATATATTTAGGAGCAGGCGTGCAAGGGGCTACATGACCTAG
CAGGACAGAACTTTCCCCAATCATAGGGTGACTCACAGCCGCCCTGGTGACTCATTTCAA
TGTGTCATTTCCGGCTGCTGTGTGTGAGCAGTGGACACGTGAGAGAGGGAGAGAAAATGA
CAGAGAATGAGAGAGACAGCAAGTTCGGGCTCCACTACCCCCATTAGATAATCTTTCTGC
AAACCAGCTCGCAGGAGGTTACGGCATGCAGACCAATTTATTGAAGAATTGCACAGAGAG
GTTGAATGAATGTAACTAATAGAACTCCCACCATCCCACCATGCCCTTCAGTGAAAAATG
TTCGTTCCTGGCATTTTTTTTTTCTTTTTTCATTATGCACTGGACAATGACAGCCACACA
CGTACCCCCGAGGATACCCAAATGTGGGGTCCAGCGTTCTTAAAATTGTGTTTTCTATGC
TTTTTCACTTTTGATATAGAAGCAAGTTAAAAAAAAAGTTTTTAAAAAAATAATAAATAA
ACACAAAAAAAGAATAAAAAAAAA

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               1-916, gnl|bosTau2|chr25 (32769508-32770413)
               

               
               1-916, gnl|Hg17|chr7 (100374907-100375968)
               

               
               1-916, gnl|Mm7|chr5 (136033422-136032425)
               


               
               440-748, gnl|bosTau2|chr2 (42802863-42802557)
               

               
               440-748, gnl|Hg17|chr7 (100375340-100375802)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-916, gnl|bosTau2|chr25 (32769508-32770413)
               

               
               1-916, gnl|Hg17|chr7 (100374907-100375968)
               

               
               1-916, gnl|Mm7|chr5 (136033422-136032425)
               


               
               440-748, gnl|bosTau2|chr2 (42802863-42802557)
               

               
               440-748, gnl|Hg17|chr7 (100375340-100375802)

Expressed library(ies): 20 entry(ies)

More info

Expressed library(ies): 20 entry(ies)

Help | Less info


               
               aor (2.92912)
               

               
               pla (2.67344)
               

               
               gul (0.887942)
               

               
               amn (0.417711)
               

               
               sug (0.381874)
               

               
               spl (0.286369)
               

               
               hea (0.204499)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               ton (0.1755)
               

               
               cje (0.165235)
               

               
               cag (0.151194)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (2.92912)
               

               
               pla (2.67344)
               

               
               gul (0.887942)
               

               
               amn (0.417711)
               

               
               sug (0.381874)
               

               
               spl (0.286369)
               

               
               hea (0.204499)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               ton (0.1755)
               

               
               cje (0.165235)
               

               
               cag (0.151194)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	1-916, gnl\|bosTau2\|chr25 (32769508-32770413)
	1-916, gnl\|Hg17\|chr7 (100374907-100375968)
	1-916, gnl\|Mm7\|chr5 (136033422-136032425)

	440-748, gnl\|bosTau2\|chr2 (42802863-42802557)
	440-748, gnl\|Hg17\|chr7 (100375340-100375802)

	aor (2.92912)
	pla (2.67344)
	gul (0.887942)
	amn (0.417711)
	sug (0.381874)
	spl (0.286369)
	hea (0.204499)
	nlu (0.191681)
	cmu (0.186393)
	ton (0.1755)
	cje (0.165235)
	cag (0.151194)
	che (0.136314)
	ssp (0.13552)
	ute (0.132784)
	bla (0.124347)
	clu (0.119646)
	cty (0.10408)
	jej (0.0989218)
	ldo (0.0970026)