Non-Coding RNA Search

Ss1.1-mAY1-MI-P-AY1-nqj-f-06-0-UI.s1.3

Sequence:


               
               TTAAGAACGATAAATATGTTGTATATTGGATTGCTGTGTTCTTTTCTTTTCTTTTTGTTT
CCAAAAAGTAAGGCAAATTCCAGACCACCGAGTTAGGATTTTCTTGTCCCTGAAGACCAG
CCAATTTCATACTTATTTAAGATTGATTCCACACTCCGATTTCAAGCAGGGTGCCTGGAT
TCTCCTCTTAGAGCAAGTGAACTTTTTCCACCCTCATGGGGTTGGACGTCAAGGTGACTC
TGAAAAAACAGAGAGACTGCCGTTGCCTCAGGTGCATTAAGCTTAGAGTCAACGTATCAT
GTTCACTTGAAAAAAATGATTTCCTGTGGGCCTTTGGCAACTTCCCTTTCCAACGCAGAG
AAAAACTTAGTCACCCTGAAAACCTACACAATAAATGGAACTTGTAGATGTGGGCAGGAG
GCTTGGGGGTGGACACCGTGTATGTTTAAATTAAACCCTTTATCCCTGAGAAGCTGTTGT
ATGGGTCAGAGAAAATAAATGCTTAGAAGCTGTTCACATCTTCAAGAGCAGAAGCAAACC
ACATGTCTCAGCTATATTATTATTTATTTTTTATGCATAACGTGAATCATTTCTTCTGTA
TTAATTTCCAATGGGTTTTACCCTCTATTTAAATGCTTTGAAAAACAGTGCATTGACAAT
GGGTTGATATTTTTCTTTAAAAGAAAAATATAATTATGAAAGCCAAGATAATCTGAAGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAAGAACGATAAATATGTTGTATATTGGATTGCTGTGTTCTTTTCTTTTCTTTTTGTTT
CCAAAAAGTAAGGCAAATTCCAGACCACCGAGTTAGGATTTTCTTGTCCCTGAAGACCAG
CCAATTTCATACTTATTTAAGATTGATTCCACACTCCGATTTCAAGCAGGGTGCCTGGAT
TCTCCTCTTAGAGCAAGTGAACTTTTTCCACCCTCATGGGGTTGGACGTCAAGGTGACTC
TGAAAAAACAGAGAGACTGCCGTTGCCTCAGGTGCATTAAGCTTAGAGTCAACGTATCAT
GTTCACTTGAAAAAAATGATTTCCTGTGGGCCTTTGGCAACTTCCCTTTCCAACGCAGAG
AAAAACTTAGTCACCCTGAAAACCTACACAATAAATGGAACTTGTAGATGTGGGCAGGAG
GCTTGGGGGTGGACACCGTGTATGTTTAAATTAAACCCTTTATCCCTGAGAAGCTGTTGT
ATGGGTCAGAGAAAATAAATGCTTAGAAGCTGTTCACATCTTCAAGAGCAGAAGCAAACC
ACATGTCTCAGCTATATTATTATTTATTTTTTATGCATAACGTGAATCATTTCTTCTGTA
TTAATTTCCAATGGGTTTTACCCTCTATTTAAATGCTTTGAAAAACAGTGCATTGACAAT
GGGTTGATATTTTTCTTTAAAAGAAAAATATAATTATGAAAGCCAAGATAATCTGAAGCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               586-720, + strand, RNAz p=0.809081

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               586-720, + strand, RNAz p=0.809081

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-720, gnl|bosTau2|chr4 (46327575-46326853)
               

               
               1-720, gnl|Hg17|chr7 (41499119-41498396)
               

               
               1-720, gnl|Mm7|chr13 (15397993-15398676)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-720, gnl|bosTau2|chr4 (46327575-46326853)
               

               
               1-720, gnl|Hg17|chr7 (41499119-41498396)
               

               
               1-720, gnl|Mm7|chr13 (15397993-15398676)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ova (0.516529)
               

               
               ret (0.128733)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.516529)
               

               
               ret (0.128733)

	1-720, gnl\|bosTau2\|chr4 (46327575-46326853)
	1-720, gnl\|Hg17\|chr7 (41499119-41498396)
	1-720, gnl\|Mm7\|chr13 (15397993-15398676)