Ss1.1-mAY1-MI-P-AY1-nqm-f-07-0-UI.s1.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCAGGTTTGTCTGTAAGAATAACGGAGTCTTGTTCGAAAACCAGCTGCTTCAAATTGGAC TGAAGTCCGAGTTTCGGCAGAACTTGGGTCGCATGTTCATCTTTTACGGAAACAAGACCT CCACGCAGTTCCTGAGCTTCACGCCCACGCTCGTCTGCTCCGACAGCCTCCAGGCCAATC TGAGCCTGCGGACCCAGCCCGTGGGCCCCACCGTGGACGGGGGCGCACAGGTGCAGCAGG CCGTCAACATAGAGTGCCTGTCCGACTTCGCAGAGGCGCCCGTGCTCAGCGTCCAGTTCA GGTACGGGGGAACCTTTCAGAACGTGTCCGTTAAGCTGCCAATCACACTCAACAAATTTT TCCAGCCCACAGAGATGGCTTCTCAGGATTTCTTCCAACGTTGGAAGCAGCTGAGCAGTC CCCAGCAGGAGGTGCAGAGCATCTTCCGAGCGAAGCACCCGATGGACACGGAGGTCACCA AAGCCAAGATTATTGGCTTTGGCTCTGCACTCCTGGAGGACGTGGATCCGAACCCTGCAA ACTTTGTGGGTGCAGGCATCATACACACCAAAACCAGCCAGATTGGGTGCCTGCTGCGTT TGGAGCCAAATCTGCAAGCCCAGATGTACCGACTCACGCTGAGGACGAGCAGAGAGACGG TCTCGCAGAGGCTGTGCGAACTGCTCTCAGAACAGTTTTAATCAGCGAGGACAGAGGGTC GGGCCGGCTCTGCATTTTTCTTTGTCTCCACCCCGTCTTCGTGCTGCGAGTAAACACCTC GTCTAGTGTCGCAGCCCAGGCCCTCCCCGCTGCCGCGGCCCGTCCCCGACGGGGCGGGTG GGATCCTGTGCCGTTGACGAAGAGACCCCTCGGCCTGGACTCAGCCGGCTGCCAGCCAGG ACGAGGGGCACGGATCCTGGGGTGGACTTTGATGGAAATCAGGACAGTTCTGGGGTTAAA TCTACAAATTAAAGGGAAATTAGAAGTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCAGGTTTGTCTGTAAGAATAACGGAGTCTTGTTCGAAAACCAGCTGCTTCAAATTGGAC TGAAGTCCGAGTTTCGGCAGAACTTGGGTCGCATGTTCATCTTTTACGGAAACAAGACCT CCACGCAGTTCCTGAGCTTCACGCCCACGCTCGTCTGCTCCGACAGCCTCCAGGCCAATC TGAGCCTGCGGACCCAGCCCGTGGGCCCCACCGTGGACGGGGGCGCACAGGTGCAGCAGG CCGTCAACATAGAGTGCCTGTCCGACTTCGCAGAGGCGCCCGTGCTCAGCGTCCAGTTCA GGTACGGGGGAACCTTTCAGAACGTGTCCGTTAAGCTGCCAATCACACTCAACAAATTTT TCCAGCCCACAGAGATGGCTTCTCAGGATTTCTTCCAACGTTGGAAGCAGCTGAGCAGTC CCCAGCAGGAGGTGCAGAGCATCTTCCGAGCGAAGCACCCGATGGACACGGAGGTCACCA AAGCCAAGATTATTGGCTTTGGCTCTGCACTCCTGGAGGACGTGGATCCGAACCCTGCAA ACTTTGTGGGTGCAGGCATCATACACACCAAAACCAGCCAGATTGGGTGCCTGCTGCGTT TGGAGCCAAATCTGCAAGCCCAGATGTACCGACTCACGCTGAGGACGAGCAGAGAGACGG TCTCGCAGAGGCTGTGCGAACTGCTCTCAGAACAGTTTTAATCAGCGAGGACAGAGGGTC GGGCCGGCTCTGCATTTTTCTTTGTCTCCACCCCGTCTTCGTGCTGCGAGTAAACACCTC GTCTAGTGTCGCAGCCCAGGCCCTCCCCGCTGCCGCGGCCCGTCCCCGACGGGGCGGGTG GGATCCTGTGCCGTTGACGAAGAGACCCCTCGGCCTGGACTCAGCCGGCTGCCAGCCAGG ACGAGGGGCACGGATCCTGGGGTGGACTTTGATGGAAATCAGGACAGTTCTGGGGTTAAA TCTACAAATTAAAGGGAAATTAGAAGTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-113, gnl|bosTau2|chr18 (54462417-54462303) | |
| 1-113, gnl|Hg17|chr11 (993717-993832) | |
| 1-113, gnl|Mm7|chr7 (138043425-138043540) | |
| 299-417, gnl|bosTau2|chr18 (54459242-54459124) | |
| 299-417, gnl|canFam2|chr18 (48396468-48396584) | |
| 299-417, gnl|danRer3|chr3 (27631442-27631326) | |
| 299-417, gnl|dasNov1|scaffold_168492 (5302-5186) | |
| 299-417, gnl|echTel1|scaffold_250147 (10327-10224) | |
| 299-417, gnl|fr1|chrUn (290396665-290396781) | |
| 299-417, gnl|galGal2|chr5 (12587583-12587467) | |
| 299-417, gnl|hg17|chr11 (999098-999214) | |
| 299-417, gnl|Hg17|chr11 (999097-999215) | |
| 299-417, gnl|loxAfr1|scaffold_118833 (378-481) | |
| 299-417, gnl|mm7|chr7 (138047391-138047494) | |
| 299-417, gnl|Mm7|chr7 (138047377-138047495) | |
| 299-417, gnl|monDom2|scaffold_105 (3970015-3969900) | |
| 299-417, gnl|panTro1|chr9 (1115492-1115608) | |
| 299-417, gnl|rheMac2|chr14 (816546-816662) | |
| 299-417, gnl|rn3|chr1 (201966356-201966472) | |
| 299-417, gnl|tetNig1|chrUn_random (32459371-32459255) | |
| 299-417, gnl|xenTro1|scaffold_1088 (207500-207603) | |
| 620-988, gnl|bosTau2|chr18 (54457982-54457589) | |
| 620-988, gnl|Hg17|chr11 (1000544-1000924) | |
| 620-988, gnl|Mm7|chr7 (138048609-138048968) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-113, gnl|bosTau2|chr18 (54462417-54462303) | |
| 1-113, gnl|Hg17|chr11 (993717-993832) | |
| 1-113, gnl|Mm7|chr7 (138043425-138043540) | |
| 299-417, gnl|bosTau2|chr18 (54459242-54459124) | |
| 299-417, gnl|canFam2|chr18 (48396468-48396584) | |
| 299-417, gnl|danRer3|chr3 (27631442-27631326) | |
| 299-417, gnl|dasNov1|scaffold_168492 (5302-5186) | |
| 299-417, gnl|echTel1|scaffold_250147 (10327-10224) | |
| 299-417, gnl|fr1|chrUn (290396665-290396781) | |
| 299-417, gnl|galGal2|chr5 (12587583-12587467) | |
| 299-417, gnl|hg17|chr11 (999098-999214) | |
| 299-417, gnl|Hg17|chr11 (999097-999215) | |
| 299-417, gnl|loxAfr1|scaffold_118833 (378-481) | |
| 299-417, gnl|mm7|chr7 (138047391-138047494) | |
| 299-417, gnl|Mm7|chr7 (138047377-138047495) | |
| 299-417, gnl|monDom2|scaffold_105 (3970015-3969900) | |
| 299-417, gnl|panTro1|chr9 (1115492-1115608) | |
| 299-417, gnl|rheMac2|chr14 (816546-816662) | |
| 299-417, gnl|rn3|chr1 (201966356-201966472) | |
| 299-417, gnl|tetNig1|chrUn_random (32459371-32459255) | |
| 299-417, gnl|xenTro1|scaffold_1088 (207500-207603) | |
| 620-988, gnl|bosTau2|chr18 (54457982-54457589) | |
| 620-988, gnl|Hg17|chr11 (1000544-1000924) | |
| 620-988, gnl|Mm7|chr7 (138048609-138048968) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| nca (0.273748) | |
| cov (0.264306) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| fcc (0.197785) | |
| ill (0.175593) | |
| ton (0.1755) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| jca (0.11396) | |
| eje (0.0988338) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nca (0.273748) | |
| cov (0.264306) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| fcc (0.197785) | |
| ill (0.175593) | |
| ton (0.1755) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| jca (0.11396) | |
| eje (0.0988338) |