Non-Coding RNA Search

Ss1.1-mAY1-MI-P-AY1-nqo-h-11-0-UI.s1.3

Sequence:


               
               GGAAAAGATCAAACAGCGACTGTTTGAGAACCTGAGAATGCTGCCCCATGCACCTGGGGT
CCAAATGCAGGCCATTCCTGAGGATGCCATTCCAGAGGAGAGTGGCGATGAGGATGAAGA
AGACCCTGACAAGCGCATCTCAATCTGTTCCTCGGACAAACGAATTGCCTGTGAGGAAGA
GTTCTCTGACTCTGATGAGGAGGGAGAAGGTGGTCGCAAGAACTCTTCCAACTTCAAAAA
AGCCAAGAGAGTCAAAACAGAAGATGAGAAAGAGAAGGACCCAGAAGAGAAGAAAGAAGT
CACAGAAGAGGAGAAAACCAAGGAGGAGAAGCAAGAAGCCAAAGGGGTCAAGGAGGAGGT
CAAGTTGGCCTGAACAGACCTCTCCAATTCTGGCTTCTTGCCAAGTTCCCCGTCTTTATC
CCACAACCCCTCAGATTTTATATTTTCTATTTCTGTGTATTTATATAAAAATATATTAAA
TATAAATATCCCCAGGGACTAGACAGGAACCAGGCTCCTGAGCCTAGGGCACACGTGTTA
GGTTTCTAATAGCTGCCTCACCATCCATCCCTCTCCACCTCTTAATTTCAAACCATAACA
GGTGGAAGGGATATACCTAAGCAGCCATAGGACAAAATCTTGACGTGACTAATAACTTTG
AAAGGGTGCCCTCGTCGAGTATTTTAGAAGGGTTGACTGGGTCTTCAGGGATTCCTTGTT
TTTTCAGGCTCCTTAAGGTAACATCAGCCATTTTTAGATTGGTTCTGTTCTCATACCTTT
CCACTGCCCCCCAGTGAGCCAAGAAACTCACACTGCCTGCCCTCTCTTCCTCCCCCAATT
CTGCAGGTGAAGATTGGTAGTCTAGGTTCCTTTTTGAGATACTATTTCCATTTTTGTGCG
AATCTTTGTAATAAAATGGTACATTTCTATACCCTCAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAAAGATCAAACAGCGACTGTTTGAGAACCTGAGAATGCTGCCCCATGCACCTGGGGT
CCAAATGCAGGCCATTCCTGAGGATGCCATTCCAGAGGAGAGTGGCGATGAGGATGAAGA
AGACCCTGACAAGCGCATCTCAATCTGTTCCTCGGACAAACGAATTGCCTGTGAGGAAGA
GTTCTCTGACTCTGATGAGGAGGGAGAAGGTGGTCGCAAGAACTCTTCCAACTTCAAAAA
AGCCAAGAGAGTCAAAACAGAAGATGAGAAAGAGAAGGACCCAGAAGAGAAGAAAGAAGT
CACAGAAGAGGAGAAAACCAAGGAGGAGAAGCAAGAAGCCAAAGGGGTCAAGGAGGAGGT
CAAGTTGGCCTGAACAGACCTCTCCAATTCTGGCTTCTTGCCAAGTTCCCCGTCTTTATC
CCACAACCCCTCAGATTTTATATTTTCTATTTCTGTGTATTTATATAAAAATATATTAAA
TATAAATATCCCCAGGGACTAGACAGGAACCAGGCTCCTGAGCCTAGGGCACACGTGTTA
GGTTTCTAATAGCTGCCTCACCATCCATCCCTCTCCACCTCTTAATTTCAAACCATAACA
GGTGGAAGGGATATACCTAAGCAGCCATAGGACAAAATCTTGACGTGACTAATAACTTTG
AAAGGGTGCCCTCGTCGAGTATTTTAGAAGGGTTGACTGGGTCTTCAGGGATTCCTTGTT
TTTTCAGGCTCCTTAAGGTAACATCAGCCATTTTTAGATTGGTTCTGTTCTCATACCTTT
CCACTGCCCCCCAGTGAGCCAAGAAACTCACACTGCCTGCCCTCTCTTCCTCCCCCAATT
CTGCAGGTGAAGATTGGTAGTCTAGGTTCCTTTTTGAGATACTATTTCCATTTTTGTGCG
AATCTTTGTAATAAAATGGTACATTTCTATACCCTCAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5HYD4_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5HYD4_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               138-256, - strand, RNAz p=0.843819
               

               
               384-501, - strand, RNAz p=0.988037

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               138-256, - strand, RNAz p=0.843819
               

               
               384-501, - strand, RNAz p=0.988037

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               138-296, gnl|bosTau2|chr2 (73591290-73591448)
               

               
               138-296, gnl|Hg17|chr1 (32466778-32466936)
               

               
               138-296, gnl|Mm7|chr4 (128962161-128962003)
               


               
               345-785, gnl|bosTau2|chr2 (73592291-73592735)
               

               
               345-785, gnl|Hg17|chr1 (32467710-32468211)
               

               
               345-785, gnl|Mm7|chr4 (128961284-128960890)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               138-296, gnl|bosTau2|chr2 (73591290-73591448)
               

               
               138-296, gnl|Hg17|chr1 (32466778-32466936)
               

               
               138-296, gnl|Mm7|chr4 (128962161-128962003)
               


               
               345-785, gnl|bosTau2|chr2 (73592291-73592735)
               

               
               345-785, gnl|Hg17|chr1 (32467710-32468211)
               

               
               345-785, gnl|Mm7|chr4 (128961284-128960890)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               hea (0.408998)
               

               
               med (0.232504)
               

               
               nbm (0.198649)
               

               
               sto (0.179824)
               

               
               nco (0.161734)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               cly (0.120642)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 15 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.408998)
               

               
               med (0.232504)
               

               
               nbm (0.198649)
               

               
               sto (0.179824)
               

               
               nco (0.161734)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               cly (0.120642)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	138-256, - strand, RNAz p=0.843819
	384-501, - strand, RNAz p=0.988037

	138-296, gnl\|bosTau2\|chr2 (73591290-73591448)
	138-296, gnl\|Hg17\|chr1 (32466778-32466936)
	138-296, gnl\|Mm7\|chr4 (128962161-128962003)

	345-785, gnl\|bosTau2\|chr2 (73592291-73592735)
	345-785, gnl\|Hg17\|chr1 (32467710-32468211)
	345-785, gnl\|Mm7\|chr4 (128961284-128960890)

	hea (0.408998)
	med (0.232504)
	nbm (0.198649)
	sto (0.179824)
	nco (0.161734)
	ski (0.146735)
	spl (0.143184)
	che (0.136314)
	lyg (0.133103)
	nmm (0.132802)
	ova (0.129132)
	thg (0.126791)
	cly (0.120642)
	cty (0.10408)
	jej (0.0989218)