Non-Coding RNA Search

Ss1.1-mAY1-MI-P-AY1-nqp-d-04-0-UI.s1.3

Sequence:


               
               TGAATGAACAAAGTATTTTTTACATCGAGCTGTGGCATCTCGAAGCGAATGCTGCAAAGC
TCTGTCTGTCTGTCTCGTCTCCCGCCCTGTCCCTCCCTGCTCCGCCCCCCATCTCTCCCT
CTGTTCAAGATGAAGACTGTTGGGTAAGAACATTTTTAAGTGGTTTAACAAAACATTATG
CTTTTTTAGAAGTCAGCCTAGGGTTTTCTTGGTGTCCTTTTTATCCTAGGTGTTCAGTGT
GCATTGTAATGATTGTAGAACTTGAACTGCCCTAGAACGTGAATGACTAGCGTTGTGTTT
TGTTCCTTTTGACTTTGTAAAGGATTTCCTCTGAGGAGTTCTCGCTTTAGAATTTCATAC
TGTGTGGCTCCTTCTTTGACTTTACTGACAAATGTTAAAGTCTTTCGTGTGCCAGTATCT
AACCTGAGCTATAAGTGTTAAGTAGGTATATCCTTATCCACTTAGTGCAGGTACCAGAAC
CGAAAGATACTCCTTATTTTGGTGGATTGAGAGGTAGCTTCTGCTGTGTATTATGGCAGC
GACAGATCTGATCATAACTGAACCAGAATTTGGATCCTAGAAGTGCACTTCCTAGCTGTT
TTGTACTTAGGGGTAGGAAAATGCAATGAGAATCTTATGCTTAGAATGTAGCAGTGACCA
CAGAGGGTAACTACACTGCAAGACTTAAGAGCTTTGAGCATGTGACACTATATCCTTTTG
CTGGGGGAGCAGGGTATAAAGATACGCAGGAGATGTAGACTAGCTCACAGTAAAGTTTTA
TGTGTATGTTTTAACTTCCATGATATTTATTATTTTGTAGAGACATTTGTGATTGTTTAG
AGTTATTGTTTTTATTATACTTATGTATAAGGTTGACTTTTTTAAATAAATAAGCCAAAA
ATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAATGAACAAAGTATTTTTTACATCGAGCTGTGGCATCTCGAAGCGAATGCTGCAAAGC
TCTGTCTGTCTGTCTCGTCTCCCGCCCTGTCCCTCCCTGCTCCGCCCCCCATCTCTCCCT
CTGTTCAAGATGAAGACTGTTGGGTAAGAACATTTTTAAGTGGTTTAACAAAACATTATG
CTTTTTTAGAAGTCAGCCTAGGGTTTTCTTGGTGTCCTTTTTATCCTAGGTGTTCAGTGT
GCATTGTAATGATTGTAGAACTTGAACTGCCCTAGAACGTGAATGACTAGCGTTGTGTTT
TGTTCCTTTTGACTTTGTAAAGGATTTCCTCTGAGGAGTTCTCGCTTTAGAATTTCATAC
TGTGTGGCTCCTTCTTTGACTTTACTGACAAATGTTAAAGTCTTTCGTGTGCCAGTATCT
AACCTGAGCTATAAGTGTTAAGTAGGTATATCCTTATCCACTTAGTGCAGGTACCAGAAC
CGAAAGATACTCCTTATTTTGGTGGATTGAGAGGTAGCTTCTGCTGTGTATTATGGCAGC
GACAGATCTGATCATAACTGAACCAGAATTTGGATCCTAGAAGTGCACTTCCTAGCTGTT
TTGTACTTAGGGGTAGGAAAATGCAATGAGAATCTTATGCTTAGAATGTAGCAGTGACCA
CAGAGGGTAACTACACTGCAAGACTTAAGAGCTTTGAGCATGTGACACTATATCCTTTTG
CTGGGGGAGCAGGGTATAAAGATACGCAGGAGATGTAGACTAGCTCACAGTAAAGTTTTA
TGTGTATGTTTTAACTTCCATGATATTTATTATTTTGTAGAGACATTTGTGATTGTTTAG
AGTTATTGTTTTTATTATACTTATGTATAAGGTTGACTTTTTTAAATAAATAAGCCAAAA
ATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               203-895, gnl|bosTau2|chr2 (62169002-62168316)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               203-895, gnl|bosTau2|chr2 (62169002-62168316)

Expressed library(ies): 20 entry(ies)

More info

Expressed library(ies): 20 entry(ies)

Help | Less info


               
               cbe (0.717703)
               

               
               aor (0.390549)
               

               
               kid (0.389206)
               

               
               thg (0.380373)
               

               
               gul (0.355177)
               

               
               eye (0.341006)
               

               
               spc (0.340097)
               

               
               csk (0.281492)
               

               
               ret (0.257467)
               

               
               mgp (0.230681)
               

               
               ecc (0.23007)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ese (0.126502)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.717703)
               

               
               aor (0.390549)
               

               
               kid (0.389206)
               

               
               thg (0.380373)
               

               
               gul (0.355177)
               

               
               eye (0.341006)
               

               
               spc (0.340097)
               

               
               csk (0.281492)
               

               
               ret (0.257467)
               

               
               mgp (0.230681)
               

               
               ecc (0.23007)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ese (0.126502)

	cbe (0.717703)
	aor (0.390549)
	kid (0.389206)
	thg (0.380373)
	gul (0.355177)
	eye (0.341006)
	spc (0.340097)
	csk (0.281492)
	ret (0.257467)
	mgp (0.230681)
	ecc (0.23007)
	fhi (0.169578)
	mga (0.160205)
	isp (0.150376)
	liv (0.146284)
	spl (0.143184)
	ssp (0.13552)
	lyg (0.133103)
	ova (0.129132)
	ese (0.126502)