Non-Coding RNA Search

Ss1.1-mAY1-MI-P-AY1-nqp-d-06-0-UI.s1.3

Sequence:


               
               TCCCCGTGGGCGGGGGGGCAGGGCGCTTGGCACCCCTGCATTAGTGCCCTCCATCACGAG
CCGAGGGGGTTTTCTACAGTAACCTCATTCTCACTTTGTCTCGTGTCTTTCTCTGGACTC
AAGGACCACCTTGACCCCCAGCTCTGCCTGCTGCTGGGGGTGGCCCTGCAGCTCGGCCCT
GCCCTCTCGCCAGCCTTGCCCCTGCCCGGGGCTGGGCCCGCGGGTCCTCAGCTCGCTCCC
CAGGGCCCCCCGATGCCTTCTGCAAGCCCCCTTCCCTGGAGCCCTGGGGCAGTGGCTGGA
CCTCTCCCCAACCTGGGCCCTTGGCCAGGCCAAGGCCATTTGGCTGGCCACTATGCAAAG
GCTGCCAGGGAGGCTCCATGGGCAGCAAAGTGGGTGCTGACCAGGCCCCCAACTCCCTTG
CCTGCTGGCTGTGACCCCTAAAGAACAGAATGAACTCCTTCTTCTCCCTGCTTGAGCTCT
GCCCCCACCTCCCACCCCACCGCCTGCGATGGGACCTCTGCCTGGGCCTTGGCTGGCGGG
AGCCCCTCCACTCCAGATCATAGTTAATAAATGGCCGCTTGCACCCGCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCCGTGGGCGGGGGGGCAGGGCGCTTGGCACCCCTGCATTAGTGCCCTCCATCACGAG
CCGAGGGGGTTTTCTACAGTAACCTCATTCTCACTTTGTCTCGTGTCTTTCTCTGGACTC
AAGGACCACCTTGACCCCCAGCTCTGCCTGCTGCTGGGGGTGGCCCTGCAGCTCGGCCCT
GCCCTCTCGCCAGCCTTGCCCCTGCCCGGGGCTGGGCCCGCGGGTCCTCAGCTCGCTCCC
CAGGGCCCCCCGATGCCTTCTGCAAGCCCCCTTCCCTGGAGCCCTGGGGCAGTGGCTGGA
CCTCTCCCCAACCTGGGCCCTTGGCCAGGCCAAGGCCATTTGGCTGGCCACTATGCAAAG
GCTGCCAGGGAGGCTCCATGGGCAGCAAAGTGGGTGCTGACCAGGCCCCCAACTCCCTTG
CCTGCTGGCTGTGACCCCTAAAGAACAGAATGAACTCCTTCTTCTCCCTGCTTGAGCTCT
GCCCCCACCTCCCACCCCACCGCCTGCGATGGGACCTCTGCCTGGGCCTTGGCTGGCGGG
AGCCCCTCCACTCCAGATCATAGTTAATAAATGGCCGCTTGCACCCGCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               211-400, - strand, RNAz p=0.65095
               

               
               441-556, - strand, RNAz p=0.688977

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               211-400, - strand, RNAz p=0.65095
               

               
               441-556, - strand, RNAz p=0.688977

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               23-588, gnl|bosTau2|chr16 (37946036-37946584)
               

               
               23-588, gnl|Hg17|chr1 (1268180-1267693)
               

               
               23-588, gnl|Mm7|chr4 (154896235-154896797)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               23-588, gnl|bosTau2|chr16 (37946036-37946584)
               

               
               23-588, gnl|Hg17|chr1 (1268180-1267693)
               

               
               23-588, gnl|Mm7|chr4 (154896235-154896797)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               nlu (0.383362)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               lnt (0.142308)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.383362)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               lnt (0.142308)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)

	211-400, - strand, RNAz p=0.65095
	441-556, - strand, RNAz p=0.688977

	23-588, gnl\|bosTau2\|chr16 (37946036-37946584)
	23-588, gnl\|Hg17\|chr1 (1268180-1267693)
	23-588, gnl\|Mm7\|chr4 (154896235-154896797)

	nlu (0.383362)
	fhi (0.169578)
	csp (0.161186)
	lnt (0.142308)
	ese (0.126502)
	ebs (0.118301)