Non-Coding RNA Search

Ss1.1-mAY1-MI-P-AY1-nqp-e-07-0-UI.s1.3

Sequence:


               
               AACATAGCATTCTTCAGGGGAACCAGGGCTGAGTGCCATCACAAGGTTATGACAGCTCTG
AGACACACCTGTTACAGAGGGTTTTACCGTTTTTCTTGTGCCTCAGCTCTGTACCTGACA
GTTTATGATTCAGCGCAGCCAAGCTAGAAGGAACGAAGGTCATCTAAGACTGTGATTTGG
ACGAATCCCTGCCTGTTATTTGCACAGATGGGTGGTGGTACCCTGGACTTCAAAAGGGAG
TGGCGGTAGAGAGTGAGATGGCTGCTCCAGATGGCTCTTGGATTTAGTGTAATTGTGGTT
AAACAGGATTTTTTTTATACACGAAGCTTGATTCTACAACCAAAATAATAGAAATGCGGG
GGAAATCATGTCTGCTTATGCTTTTTTAAAGCTTATTATAGTTTAAATAAAATGTAAAGA
ATGATAATCTTAACCCTGTACAAGTCTGGCAATGAGCTCTGCATGAGAAAATGGAAGAAA
GAATACTGAGATAATTCTAGGAAGGTAGGTGGGAGGAAGGAAATGGGTTTCACTCTTCTG
ACCATGGGCTCTGAAAGTATTCATTGCCTCTACCAGCATTCAGTATAAACCAGAGATAAG
AATATATGTACTCACGTGTGTCTGTGAGTGTGTGTGTGCGCGCGCGTCTGAGTGTTTGTT
ATTCTAAACAGCCTGTAAATATTGTAGTTGTTTAAAGTGGAGAATAAAAGCTGAGATTGT
TTTTTCTTTGCAAATATATTGCATCAAATATACAGTATTGACAGTGGATAAAACACTGAG
GAAATAAAATTTTTTTCATTTTAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACATAGCATTCTTCAGGGGAACCAGGGCTGAGTGCCATCACAAGGTTATGACAGCTCTG
AGACACACCTGTTACAGAGGGTTTTACCGTTTTTCTTGTGCCTCAGCTCTGTACCTGACA
GTTTATGATTCAGCGCAGCCAAGCTAGAAGGAACGAAGGTCATCTAAGACTGTGATTTGG
ACGAATCCCTGCCTGTTATTTGCACAGATGGGTGGTGGTACCCTGGACTTCAAAAGGGAG
TGGCGGTAGAGAGTGAGATGGCTGCTCCAGATGGCTCTTGGATTTAGTGTAATTGTGGTT
AAACAGGATTTTTTTTATACACGAAGCTTGATTCTACAACCAAAATAATAGAAATGCGGG
GGAAATCATGTCTGCTTATGCTTTTTTAAAGCTTATTATAGTTTAAATAAAATGTAAAGA
ATGATAATCTTAACCCTGTACAAGTCTGGCAATGAGCTCTGCATGAGAAAATGGAAGAAA
GAATACTGAGATAATTCTAGGAAGGTAGGTGGGAGGAAGGAAATGGGTTTCACTCTTCTG
ACCATGGGCTCTGAAAGTATTCATTGCCTCTACCAGCATTCAGTATAAACCAGAGATAAG
AATATATGTACTCACGTGTGTCTGTGAGTGTGTGTGTGCGCGCGCGTCTGAGTGTTTGTT
ATTCTAAACAGCCTGTAAATATTGTAGTTGTTTAAAGTGGAGAATAAAAGCTGAGATTGT
TTTTTCTTTGCAAATATATTGCATCAAATATACAGTATTGACAGTGGATAAAACACTGAG
GAAATAAAATTTTTTTCATTTTAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               3-802, gnl|bosTau2|chr10 (58010473-58011263)
               

               
               3-802, gnl|Hg17|chr14 (70651057-70651850)
               

               
               3-802, gnl|Mm7|chr12 (79962057-79962773)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-802, gnl|bosTau2|chr10 (58010473-58011263)
               

               
               3-802, gnl|Hg17|chr14 (70651057-70651850)
               

               
               3-802, gnl|Mm7|chr12 (79962057-79962773)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

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               cbe (0.717703)
               

               
               elu (0.385356)
               

               
               vin (0.332557)
               

               
               fcc (0.197785)
               

               
               ldo (0.194005)
               

               
               gul (0.177588)
               

               
               fco (0.157208)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.717703)
               

               
               elu (0.385356)
               

               
               vin (0.332557)
               

               
               fcc (0.197785)
               

               
               ldo (0.194005)
               

               
               gul (0.177588)
               

               
               fco (0.157208)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)

	3-802, gnl\|bosTau2\|chr10 (58010473-58011263)
	3-802, gnl\|Hg17\|chr14 (70651057-70651850)
	3-802, gnl\|Mm7\|chr12 (79962057-79962773)

	cbe (0.717703)
	elu (0.385356)
	vin (0.332557)
	fcc (0.197785)
	ldo (0.194005)
	gul (0.177588)
	fco (0.157208)
	hyp (0.142837)
	pty (0.142714)
	csk (0.140746)
	lyg (0.133103)
	nmm (0.132802)
	kid (0.129735)
	ova (0.129132)
	sug (0.127291)
	pgl (0.118483)