Non-Coding RNA Search

Ss1.1-mAY1-MI-P-AY1-nqy-e-10-0-UI.s1.3

Sequence:


               
               GAAGGGGGACGCCAACGCTGCCATGTGTACACGGATTTTTGGTCTTGAGGGTCTCTGGCC
CGTGGGCCCTTTCCAAGAACAAGTGTTTTGTTCATCTCTCTGTGCTTTGGGAGCCTCAGC
TGGGGCTCCGATCCAAGGCTGTCAATTTTGACAGTGGCATCAGGCCCCCCCACCCCTGGG
GTCCTAGGGAACATGGTCACATGAATGACAGTTTGTGGATGTGGCTGTGATCACGGTGCA
GGATTTTTTTTTTTTTTAAGGATTTTCACACATGGAGGCAAGAGTGTTCTTAGAGAGACA
CCCCTTGGAGAGATTGATGTGGTGACTTAAAATAAAAGTACTTTCACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGGGGGACGCCAACGCTGCCATGTGTACACGGATTTTTGGTCTTGAGGGTCTCTGGCC
CGTGGGCCCTTTCCAAGAACAAGTGTTTTGTTCATCTCTCTGTGCTTTGGGAGCCTCAGC
TGGGGCTCCGATCCAAGGCTGTCAATTTTGACAGTGGCATCAGGCCCCCCCACCCCTGGG
GTCCTAGGGAACATGGTCACATGAATGACAGTTTGTGGATGTGGCTGTGATCACGGTGCA
GGATTTTTTTTTTTTTTAAGGATTTTCACACATGGAGGCAAGAGTGTTCTTAGAGAGACA
CCCCTTGGAGAGATTGATGTGGTGACTTAAAATAAAAGTACTTTCACT

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               7-348, gnl|bosTau2|chr13 (21985911-21985565)
               

               
               7-348, gnl|canFam2|chr24 (8049286-8048885)
               

               
               7-348, gnl|echTel1|scaffold_217887 (3525-3167)
               

               
               7-348, gnl|hg17|chr20 (17952814-17953211)
               

               
               7-348, gnl|Hg17|chr20 (17953267-17952911)
               

               
               7-348, gnl|loxAfr1|scaffold_55993 (4609-4996)
               

               
               7-348, gnl|mm7|chr2 (144046017-144046388)
               

               
               7-348, gnl|Mm7|chr2 (144046437-144046118)
               

               
               7-348, gnl|monDom2|scaffold_1 (52769964-52770370)
               

               
               7-348, gnl|oryCun1|scaffold_201054 (353-773)
               

               
               7-348, gnl|panTro1|chr21 (17833094-17833491)
               

               
               7-348, gnl|rheMac2|chr10 (51344735-51345133)
               

               
               7-348, gnl|rn3|chr3 (132747823-132748205)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-348, gnl|bosTau2|chr13 (21985911-21985565)
               

               
               7-348, gnl|canFam2|chr24 (8049286-8048885)
               

               
               7-348, gnl|echTel1|scaffold_217887 (3525-3167)
               

               
               7-348, gnl|hg17|chr20 (17952814-17953211)
               

               
               7-348, gnl|Hg17|chr20 (17953267-17952911)
               

               
               7-348, gnl|loxAfr1|scaffold_55993 (4609-4996)
               

               
               7-348, gnl|mm7|chr2 (144046017-144046388)
               

               
               7-348, gnl|Mm7|chr2 (144046437-144046118)
               

               
               7-348, gnl|monDom2|scaffold_1 (52769964-52770370)
               

               
               7-348, gnl|oryCun1|scaffold_201054 (353-773)
               

               
               7-348, gnl|panTro1|chr21 (17833094-17833491)
               

               
               7-348, gnl|rheMac2|chr10 (51344735-51345133)
               

               
               7-348, gnl|rn3|chr3 (132747823-132748205)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cst (0.140036)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.140036)

	7-348, gnl\|bosTau2\|chr13 (21985911-21985565)
	7-348, gnl\|canFam2\|chr24 (8049286-8048885)
	7-348, gnl\|echTel1\|scaffold_217887 (3525-3167)
	7-348, gnl\|hg17\|chr20 (17952814-17953211)
	7-348, gnl\|Hg17\|chr20 (17953267-17952911)
	7-348, gnl\|loxAfr1\|scaffold_55993 (4609-4996)
	7-348, gnl\|mm7\|chr2 (144046017-144046388)
	7-348, gnl\|Mm7\|chr2 (144046437-144046118)
	7-348, gnl\|monDom2\|scaffold_1 (52769964-52770370)
	7-348, gnl\|oryCun1\|scaffold_201054 (353-773)
	7-348, gnl\|panTro1\|chr21 (17833094-17833491)
	7-348, gnl\|rheMac2\|chr10 (51344735-51345133)
	7-348, gnl\|rn3\|chr3 (132747823-132748205)