Non-Coding RNA Search

Ss1.1-mAY1-MI-P-AY1-nrb-h-04-0-UI.s1.3

Sequence:


               
               AAGGAGAATATCCTAAGTTAATAGGAACCAAAAATTGGTGATGGGCAGAGGGGATAGCCA
GAGGGGACAAACCTTAAGGCATTATAAGTGACCTTATTTCTGCTTATCTGAGCTAAGAAT
GGTGCTGATGGTGAAGTTTCACAAGACTTTTACCACACATGGAAGCACCAAAATTAAGAG
ATGGGGAAAGGGACCCCACTGATTTTTATCCCTCGTGAGGACTGTGAGAGCCTCCAGCCT
GCCTTCCTGGTGGAACATCCCCCTTTAGGAGAGCACAAGTATTAGAACAGGTTCACTCCT
TCCCCAGGCCCACTGGTTCTGGTTTTCTATGCAGATGGTTTGTCGGATTAGGGGTGGGTA
TTTTGTTTTTCTGAGGGCAGTGTGAGCTTTGAGGGCTGTGATTTGGGGAGGCATTGCTTA
GTTCCCTAGACTACCCAGGAAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGAGAATATCCTAAGTTAATAGGAACCAAAAATTGGTGATGGGCAGAGGGGATAGCCA
GAGGGGACAAACCTTAAGGCATTATAAGTGACCTTATTTCTGCTTATCTGAGCTAAGAAT
GGTGCTGATGGTGAAGTTTCACAAGACTTTTACCACACATGGAAGCACCAAAATTAAGAG
ATGGGGAAAGGGACCCCACTGATTTTTATCCCTCGTGAGGACTGTGAGAGCCTCCAGCCT
GCCTTCCTGGTGGAACATCCCCCTTTAGGAGAGCACAAGTATTAGAACAGGTTCACTCCT
TCCCCAGGCCCACTGGTTCTGGTTTTCTATGCAGATGGTTTGTCGGATTAGGGGTGGGTA
TTTTGTTTTTCTGAGGGCAGTGTGAGCTTTGAGGGCTGTGATTTGGGGAGGCATTGCTTA
GTTCCCTAGACTACCCAGGAAAGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-111, - strand, RNAz p=0.983305

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-111, - strand, RNAz p=0.983305

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-444, gnl|bosTau2|chr7 (20523952-20523475)
               

               
               1-444, gnl|canFam2|chr20 (44334979-44334541)
               

               
               1-444, gnl|dasNov1|scaffold_34850 (49305-48831)
               

               
               1-444, gnl|echTel1|scaffold_289282 (47324-46896)
               

               
               1-444, gnl|hg17|chr3 (47603726-47604179)
               

               
               1-444, gnl|Hg17|chr3 (47604279-47603831)
               

               
               1-444, gnl|loxAfr1|scaffold_22259 (57231-56797)
               

               
               1-444, gnl|mm7|chr9 (109935754-109935276)
               

               
               1-444, gnl|Mm7|chr9 (109935175-109935618)
               

               
               1-444, gnl|monDom2|scaffold_5 (82386317-82386861)
               

               
               1-444, gnl|oryCun1|scaffold_148400 (4071-3620)
               

               
               1-444, gnl|panTro1|chr2 (49069437-49069893)
               

               
               1-444, gnl|rheMac2|chr2 (88934846-88934382)
               

               
               1-444, gnl|rn3|chr8 (114632098-114631610)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-444, gnl|bosTau2|chr7 (20523952-20523475)
               

               
               1-444, gnl|canFam2|chr20 (44334979-44334541)
               

               
               1-444, gnl|dasNov1|scaffold_34850 (49305-48831)
               

               
               1-444, gnl|echTel1|scaffold_289282 (47324-46896)
               

               
               1-444, gnl|hg17|chr3 (47603726-47604179)
               

               
               1-444, gnl|Hg17|chr3 (47604279-47603831)
               

               
               1-444, gnl|loxAfr1|scaffold_22259 (57231-56797)
               

               
               1-444, gnl|mm7|chr9 (109935754-109935276)
               

               
               1-444, gnl|Mm7|chr9 (109935175-109935618)
               

               
               1-444, gnl|monDom2|scaffold_5 (82386317-82386861)
               

               
               1-444, gnl|oryCun1|scaffold_148400 (4071-3620)
               

               
               1-444, gnl|panTro1|chr2 (49069437-49069893)
               

               
               1-444, gnl|rheMac2|chr2 (88934846-88934382)
               

               
               1-444, gnl|rn3|chr8 (114632098-114631610)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               nms (0.213858)
               

               
               ute (0.132784)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               ute (0.132784)

	1-444, gnl\|bosTau2\|chr7 (20523952-20523475)
	1-444, gnl\|canFam2\|chr20 (44334979-44334541)
	1-444, gnl\|dasNov1\|scaffold_34850 (49305-48831)
	1-444, gnl\|echTel1\|scaffold_289282 (47324-46896)
	1-444, gnl\|hg17\|chr3 (47603726-47604179)
	1-444, gnl\|Hg17\|chr3 (47604279-47603831)
	1-444, gnl\|loxAfr1\|scaffold_22259 (57231-56797)
	1-444, gnl\|mm7\|chr9 (109935754-109935276)
	1-444, gnl\|Mm7\|chr9 (109935175-109935618)
	1-444, gnl\|monDom2\|scaffold_5 (82386317-82386861)
	1-444, gnl\|oryCun1\|scaffold_148400 (4071-3620)
	1-444, gnl\|panTro1\|chr2 (49069437-49069893)
	1-444, gnl\|rheMac2\|chr2 (88934846-88934382)
	1-444, gnl\|rn3\|chr8 (114632098-114631610)