Non-Coding RNA Search

Ss1.1-mAY1-MI-P-AY1-nrc-e-06-0-UI.s1.3

Sequence:


               
               TTTTTTTTTTTTTTTTTTCCTTTTTTGGCCGCCCTGGCAGCATATGGATTGCCAGGCCAG
GGATCAGATCTAAGCCACGGTTGCAACCTAAGCCGCAGGTTCAGCAAAGCCTCATCCTTA
ACCCACTGTGCTGGGCTGGGGACCAAACCTGTGTCCCAGCACTCCCAAGATGCCGCCAAT
CCCATTGCGCCACAGTGGGAACTCTTCAAATAAATTCTTAATCAAAGGAGACCTTTGAGT
TTTATTGGTCAAATCTTTGTAACACGGCTTTTGTCTTAAAGAAAAAAATTTCTCTAGTTT
TTGGCTGTGACCAATTTACGAACATTTCAAAAAACATTTGTATATGTCAAACCACATGAT
TTTCATGTTTTGCATCTACCATATATCTAACCCCAGATAATCGGTAACTATATGCACATT
TGTTGGTTTTGAGTCAGCCATTCCTATGTGAATGCATGTTTGGTTTCGGTATCATCCACT
GCCATTTGTCAAACTGCTGGCCAACAAGAGCAGGAAGTATAGTTTGGGGGTTTGAGGCGA
GGTTGGGTGGGGAGGAGGAGAGGAAATTGAGTGGCATATTGTAAATATCAGATCTATAAT
TGTAAATATCAAACCTGCCTCAGTTAGGATGGATGGAAAGCAGATCTCCAGTTTGCTTAT
ATAGGAATATCAGGTTGACTATATAGCCATACTTGAAAATGCTTCTGAGTGGTGTCAACT
TTACTTGAATGAATTTTTCATCTTGATTGACGCACAGTGGTGTACAGTTCACTTCTAAAG
CTAGTGGTTAACTTGTGTAGGAACCTTTTGCAGTTTGACACTAAGATAATGAACTCTGTG
CATTTTTCTACGCTTTTTTTAAAAACTTAGTTTCATTTCCTTTTCATGAGGTGTTTGGTT
TGTCTATAAAAATCTGAGGATGGTTATAAATACTGTAAGTATTGTAATGTTATGAATGCA
GGTTATTGAAAGCGTTTATTATTATATCATTCCTGATAATGCTATGTGAGTGTTTTTAAT
AAAATTTATATTTATTTAATGCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTCCTTTTTTGGCCGCCCTGGCAGCATATGGATTGCCAGGCCAG
GGATCAGATCTAAGCCACGGTTGCAACCTAAGCCGCAGGTTCAGCAAAGCCTCATCCTTA
ACCCACTGTGCTGGGCTGGGGACCAAACCTGTGTCCCAGCACTCCCAAGATGCCGCCAAT
CCCATTGCGCCACAGTGGGAACTCTTCAAATAAATTCTTAATCAAAGGAGACCTTTGAGT
TTTATTGGTCAAATCTTTGTAACACGGCTTTTGTCTTAAAGAAAAAAATTTCTCTAGTTT
TTGGCTGTGACCAATTTACGAACATTTCAAAAAACATTTGTATATGTCAAACCACATGAT
TTTCATGTTTTGCATCTACCATATATCTAACCCCAGATAATCGGTAACTATATGCACATT
TGTTGGTTTTGAGTCAGCCATTCCTATGTGAATGCATGTTTGGTTTCGGTATCATCCACT
GCCATTTGTCAAACTGCTGGCCAACAAGAGCAGGAAGTATAGTTTGGGGGTTTGAGGCGA
GGTTGGGTGGGGAGGAGGAGAGGAAATTGAGTGGCATATTGTAAATATCAGATCTATAAT
TGTAAATATCAAACCTGCCTCAGTTAGGATGGATGGAAAGCAGATCTCCAGTTTGCTTAT
ATAGGAATATCAGGTTGACTATATAGCCATACTTGAAAATGCTTCTGAGTGGTGTCAACT
TTACTTGAATGAATTTTTCATCTTGATTGACGCACAGTGGTGTACAGTTCACTTCTAAAG
CTAGTGGTTAACTTGTGTAGGAACCTTTTGCAGTTTGACACTAAGATAATGAACTCTGTG
CATTTTTCTACGCTTTTTTTAAAAACTTAGTTTCATTTCCTTTTCATGAGGTGTTTGGTT
TGTCTATAAAAATCTGAGGATGGTTATAAATACTGTAAGTATTGTAATGTTATGAATGCA
GGTTATTGAAAGCGTTTATTATTATATCATTCCTGATAATGCTATGTGAGTGTTTTTAAT
AAAATTTATATTTATTTAATGCAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               691-810, + strand, RNAz p=0.597667

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               691-810, + strand, RNAz p=0.597667

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               200-1044, gnl|bosTau2|chr6 (6149429-6150283)
               

               
               200-1044, gnl|Hg17|chr4 (106557734-106558559)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               200-1044, gnl|bosTau2|chr6 (6149429-6150283)
               

               
               200-1044, gnl|Hg17|chr4 (106557734-106558559)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               vin (0.332557)
               

               
               csk (0.281492)
               

               
               nms (0.213858)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               fbs (0.175346)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               ese (0.126502)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               csk (0.281492)
               

               
               nms (0.213858)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               fbs (0.175346)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               ese (0.126502)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)

	200-1044, gnl\|bosTau2\|chr6 (6149429-6150283)
	200-1044, gnl\|Hg17\|chr4 (106557734-106558559)

	vin (0.332557)
	csk (0.281492)
	nms (0.213858)
	col (0.195008)
	nlu (0.191681)
	sag (0.182715)
	fbs (0.175346)
	bfe (0.149858)
	liv (0.146284)
	lin (0.145603)
	ese (0.126502)
	cbl (0.114797)
	jca (0.11396)