Non-Coding RNA Search

Ss1.1-mAY1-MI-P-AY1-nrh-a-06-0-UI.s1.3

Sequence:


               
               TGAATGAAAGTTGAACATGCAGATGTCACAACATCTTGCTTTCTTTAAGATGGGAACAAA
GGGTCCACTCTAGGTCTTTACATGCCCATCAGCCCAGCATGTTGAACAAGGGCTATAGAG
GTAACTTTTGTTGTCATTACAAATGGAACTTGCAGGCATAGATGAAGAGTCCTATGAAGA
ATTCCTCTCCCATAATTTTGATATGAACTTAGATCCCCCCCCTTTTTTTTAATGGAACTG
GTGAATGTTCCTGAACTGCTGAAACTACGTGGTTTTTGTTTGGTTTTGTTTTAAAACATC
AGGTTTTTAGAGTTCTCTTACACTCCATCACTCCTTATACAGCTTGTGTGTTTCTTTGGG
TGTGTGCTGATGATGTTACTGAGGTTATTTACATGGTTCTATAGTGTAATTGACATGAAA
ATAATATTATCCACTGATTGCTGCAGATATCAAGAGTTTGCTAATTATTTCAAAATACTA
CCCATCCAATAAGAAAGATGGGAATGTTTGGAAAGTTATATATGCTATATATAACAGGAA
AAGTTTTATATGTCTTCCAAAATATAAGCTTCTCTTATTCATGGTTCTTCCTCTTTTCTT
CCTTAAGAAAAAAAAAAGATAGCACAAAACTTAAGACTTACCTAGGAAACTATTCATACT
CCAGTATGATGTAATTATACCCCTACAATTACTCCAGGTAGCTACACAATATACCAGGTA
AGAGTCAATGCACATTATAAAGAACTTATTGTTCTTTTCTATTCTTTCAGTGAAATAGGG
CCAGTTGGTATGTAGCCCACATATATGTGAATGAAATAAAATAAACCCCATGATCTCCTT
GCAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAATGAAAGTTGAACATGCAGATGTCACAACATCTTGCTTTCTTTAAGATGGGAACAAA
GGGTCCACTCTAGGTCTTTACATGCCCATCAGCCCAGCATGTTGAACAAGGGCTATAGAG
GTAACTTTTGTTGTCATTACAAATGGAACTTGCAGGCATAGATGAAGAGTCCTATGAAGA
ATTCCTCTCCCATAATTTTGATATGAACTTAGATCCCCCCCCTTTTTTTTAATGGAACTG
GTGAATGTTCCTGAACTGCTGAAACTACGTGGTTTTTGTTTGGTTTTGTTTTAAAACATC
AGGTTTTTAGAGTTCTCTTACACTCCATCACTCCTTATACAGCTTGTGTGTTTCTTTGGG
TGTGTGCTGATGATGTTACTGAGGTTATTTACATGGTTCTATAGTGTAATTGACATGAAA
ATAATATTATCCACTGATTGCTGCAGATATCAAGAGTTTGCTAATTATTTCAAAATACTA
CCCATCCAATAAGAAAGATGGGAATGTTTGGAAAGTTATATATGCTATATATAACAGGAA
AAGTTTTATATGTCTTCCAAAATATAAGCTTCTCTTATTCATGGTTCTTCCTCTTTTCTT
CCTTAAGAAAAAAAAAAGATAGCACAAAACTTAAGACTTACCTAGGAAACTATTCATACT
CCAGTATGATGTAATTATACCCCTACAATTACTCCAGGTAGCTACACAATATACCAGGTA
AGAGTCAATGCACATTATAAAGAACTTATTGTTCTTTTCTATTCTTTCAGTGAAATAGGG
CCAGTTGGTATGTAGCCCACATATATGTGAATGAAATAAAATAAACCCCATGATCTCCTT
GCAAAAAAAAAA

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               49-161, - strand, RNAz p=0.735343
               

               
               307-417, - strand, RNAz p=0.83672
               

               
               444-567, - strand, RNAz p=0.868644
               

               
               611-728, - strand, RNAz p=0.515475

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               49-161, - strand, RNAz p=0.735343
               

               
               307-417, - strand, RNAz p=0.83672
               

               
               444-567, - strand, RNAz p=0.868644
               

               
               611-728, - strand, RNAz p=0.515475

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               5' of NM_017420, -
               

               
               5' of NM_017420, -

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_017420, -
               

               
               5' of NM_017420, -

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               10-848, gnl|bosTau2|chr10 (49543447-49544306)
               

               
               10-848, gnl|canFam2|chr8 (38766798-38767646)
               

               
               10-848, gnl|echTel1|scaffold_281135 (45310-46142)
               

               
               10-848, gnl|galGal2|chr5 (51130639-51129851)
               

               
               10-848, gnl|hg17|chr14 (60247068-60247900)
               

               
               10-848, gnl|Hg17|chr14 (60248307-60247159)
               

               
               10-848, gnl|loxAfr1|scaffold_19991 (7181-7986)
               

               
               10-848, gnl|mm7|chr12 (71051228-71052118)
               

               
               10-848, gnl|Mm7|chr12 (71052202-71051325)
               

               
               10-848, gnl|monDom2|scaffold_8 (73258241-73259105)
               

               
               10-848, gnl|oryCun1|scaffold_176816 (8125-7289)
               

               
               10-848, gnl|panTro1|chr15 (59825174-59826004)
               

               
               10-848, gnl|rheMac2|chr7 (123722809-123723617)
               

               
               10-848, gnl|rn3|chr6 (95530823-95531715)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-848, gnl|bosTau2|chr10 (49543447-49544306)
               

               
               10-848, gnl|canFam2|chr8 (38766798-38767646)
               

               
               10-848, gnl|echTel1|scaffold_281135 (45310-46142)
               

               
               10-848, gnl|galGal2|chr5 (51130639-51129851)
               

               
               10-848, gnl|hg17|chr14 (60247068-60247900)
               

               
               10-848, gnl|Hg17|chr14 (60248307-60247159)
               

               
               10-848, gnl|loxAfr1|scaffold_19991 (7181-7986)
               

               
               10-848, gnl|mm7|chr12 (71051228-71052118)
               

               
               10-848, gnl|Mm7|chr12 (71052202-71051325)
               

               
               10-848, gnl|monDom2|scaffold_8 (73258241-73259105)
               

               
               10-848, gnl|oryCun1|scaffold_176816 (8125-7289)
               

               
               10-848, gnl|panTro1|chr15 (59825174-59826004)
               

               
               10-848, gnl|rheMac2|chr7 (123722809-123723617)
               

               
               10-848, gnl|rn3|chr6 (95530823-95531715)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ldo (0.0970026)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.0970026)

	49-161, - strand, RNAz p=0.735343
	307-417, - strand, RNAz p=0.83672
	444-567, - strand, RNAz p=0.868644
	611-728, - strand, RNAz p=0.515475

	10-848, gnl\|bosTau2\|chr10 (49543447-49544306)
	10-848, gnl\|canFam2\|chr8 (38766798-38767646)
	10-848, gnl\|echTel1\|scaffold_281135 (45310-46142)
	10-848, gnl\|galGal2\|chr5 (51130639-51129851)
	10-848, gnl\|hg17\|chr14 (60247068-60247900)
	10-848, gnl\|Hg17\|chr14 (60248307-60247159)
	10-848, gnl\|loxAfr1\|scaffold_19991 (7181-7986)
	10-848, gnl\|mm7\|chr12 (71051228-71052118)
	10-848, gnl\|Mm7\|chr12 (71052202-71051325)
	10-848, gnl\|monDom2\|scaffold_8 (73258241-73259105)
	10-848, gnl\|oryCun1\|scaffold_176816 (8125-7289)
	10-848, gnl\|panTro1\|chr15 (59825174-59826004)
	10-848, gnl\|rheMac2\|chr7 (123722809-123723617)
	10-848, gnl\|rn3\|chr6 (95530823-95531715)