Non-Coding RNA Search

Ss1.1-mAY1-MI-P-AY1-nrh-e-03-0-UI.s1.3

Sequence:


               
               TTCCACAAACAACTATTCTGATCTATTTTTTTCCAGCCATGTCACTAATTGTGAATTCCT
ACCAGCTATTGACAGGATACAGAGTTGATTTTTTAATAAAAAGTTATATATAATTATCCC
TTTAATTAAAGGGAACAGATAGACGTTACTAGTTACCAGCGGGCAGAAGCGTGGGACTAG
GTTTGGGCGCAGCAGGGAGCAGCCCGGGGTTCGCAGGGACAGTTTGACAAACTATTTCTT
TGTTTTGCTGCTTTGGTCCTCACTTCCGTCTGGTCCCGGCTCGGGCCCTGCCGGGGGGCA
GACAGCTGTTAGCTCGAACCTCGCGTTTTGCACCAGGAGCGCAGGAGGTGGCGTCCCCCG
TGCTGTCTCTGTGGGGTCGAAAGCACAGGTTTCTGTGTGTCTGAGTCTAGACTTCCTTAT
GGATTTCTATGCACACACATTTGATTGTTCTGGATGAACTGTCTTTTTTAATATTGGACA
ATTTCAGAAATGTTCTAGAAAATTCAAGAAAACGATTCCCTAAGTCACTCAGCATACATG
CTTGCCAAAGGAAGCTGGTTTAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCACAAACAACTATTCTGATCTATTTTTTTCCAGCCATGTCACTAATTGTGAATTCCT
ACCAGCTATTGACAGGATACAGAGTTGATTTTTTAATAAAAAGTTATATATAATTATCCC
TTTAATTAAAGGGAACAGATAGACGTTACTAGTTACCAGCGGGCAGAAGCGTGGGACTAG
GTTTGGGCGCAGCAGGGAGCAGCCCGGGGTTCGCAGGGACAGTTTGACAAACTATTTCTT
TGTTTTGCTGCTTTGGTCCTCACTTCCGTCTGGTCCCGGCTCGGGCCCTGCCGGGGGGCA
GACAGCTGTTAGCTCGAACCTCGCGTTTTGCACCAGGAGCGCAGGAGGTGGCGTCCCCCG
TGCTGTCTCTGTGGGGTCGAAAGCACAGGTTTCTGTGTGTCTGAGTCTAGACTTCCTTAT
GGATTTCTATGCACACACATTTGATTGTTCTGGATGAACTGTCTTTTTTAATATTGGACA
ATTTCAGAAATGTTCTAGAAAATTCAAGAAAACGATTCCCTAAGTCACTCAGCATACATG
CTTGCCAAAGGAAGCTGGTTTAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-552, gnl|bosTau2|chr16 (30478755-30478209)
               

               
               1-552, gnl|Hg17|chr1 (8348847-8348285)
               

               
               1-552, gnl|Mm7|chr4 (149609577-149610116)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-552, gnl|bosTau2|chr16 (30478755-30478209)
               

               
               1-552, gnl|Hg17|chr1 (8348847-8348285)
               

               
               1-552, gnl|Mm7|chr4 (149609577-149610116)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               cut (0.339847)
               

               
               sto (0.179824)
               

               
               nco (0.161734)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 9 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.339847)
               

               
               sto (0.179824)
               

               
               nco (0.161734)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	1-552, gnl\|bosTau2\|chr16 (30478755-30478209)
	1-552, gnl\|Hg17\|chr1 (8348847-8348285)
	1-552, gnl\|Mm7\|chr4 (149609577-149610116)

	cut (0.339847)
	sto (0.179824)
	nco (0.161734)
	csk (0.140746)
	pla (0.133672)
	ebs (0.118301)
	cty (0.10408)
	jej (0.0989218)
	eje (0.0988338)