Non-Coding RNA Search

Ss1.1-mAY1-MI-P-AY1-nrp-b-02-0-UI.s1.3

Sequence:


               
               CACGAGGTGCTGCTTGGTCTGTCAGAGGCTGCAGCCGCCCCTCTCTCGCTCTGCCTGTGG
CAGCAGCGATCGGCGGCCCAGAGCGTGGCCAACACGGCAGCAGCACTTCCCACCCAGCCG
CCCTCCTCGCAGGGACTCGGGAGGCGCAGCCCACGACAGCTGGCAAGGACCCGGGAGGAC
CCGGACTGGGTCGCAGTCCCCCTTGCCCTAACCTGTGATGGGCAAAAGGCTCCTGGGGCA
CGTCGGAGCCCTGAGACCAAGCCCAGGGCCAGCCTGTCCTCTAGGTCAAGTTTAGGAAAA
CAGGAGGTTTTATCATAGGCATAGGCAGTCGCACATAAAACGTTCAGAGGAAAAACCAAA
ATCCAGTCAACAATCCTGTCTCACTGAAGATGGCTAGGAGGTCTCAGGGGGAAACCTGAA
AAAGGATTCCGTTTCAGACGAGGATGACGGCTCCACTTGTCATCCCTGCTTGCTGCTTGT
AATCGTGGAAAGTCGGGAACCCTTTCTCGGAAGGGATTGAGTGGGATGACAGGCAGCTGA
TGGAGAGCAGTTCACGTCAGGCTGAAGTGCCTCAGGGCTACCCAGAGTTGTTGTTTTGCG
GGGTTGGTTGTTGTTTTGCTTTTTGATTTTTTTTTTTTTTCTTTGTCCACACACACATCA
GGCGGAAGTTCCCAGGCCAGGGATCAAACCTGCGCCGTGGCAGGCACCCAGGCCCTTGCA
GTGACAGTGCTGGATCCTTCACCTGCTGTGCCATAAAGGAACTCCTGCGTTGTTTAGTTT
TTAAGGATCCAGTCTAAAAATCCAGGCTAGTCCATTTGTTTAAGGAAACATTTTGTACAT
TGACCTCACACTGTATAATCTTTATTATCCTATTCTGATATGCCAAACAGCAAGTGTAAC
TACACCAAGTGCTGTAATTGTAGATACGAGAGGAACTATGGCCTTTGACTTCCTTCCAGT
GTGACAACAGCAGGTGTGAATTGTGATACATCTGAAGACTGGCCCTGCAGAGATGAGCTT
GCATCCAAAGTGTTTTTTGGTGACTCCATGAACTATTCATTAACCCTTTGTATCTTTGAC
GATTTCACCCCACCTTTACATCTGAAAGTTTGAAGAAATTACCTGAAACTAAAATAAAGA
TTTATATATATATAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACGAGGTGCTGCTTGGTCTGTCAGAGGCTGCAGCCGCCCCTCTCTCGCTCTGCCTGTGG
CAGCAGCGATCGGCGGCCCAGAGCGTGGCCAACACGGCAGCAGCACTTCCCACCCAGCCG
CCCTCCTCGCAGGGACTCGGGAGGCGCAGCCCACGACAGCTGGCAAGGACCCGGGAGGAC
CCGGACTGGGTCGCAGTCCCCCTTGCCCTAACCTGTGATGGGCAAAAGGCTCCTGGGGCA
CGTCGGAGCCCTGAGACCAAGCCCAGGGCCAGCCTGTCCTCTAGGTCAAGTTTAGGAAAA
CAGGAGGTTTTATCATAGGCATAGGCAGTCGCACATAAAACGTTCAGAGGAAAAACCAAA
ATCCAGTCAACAATCCTGTCTCACTGAAGATGGCTAGGAGGTCTCAGGGGGAAACCTGAA
AAAGGATTCCGTTTCAGACGAGGATGACGGCTCCACTTGTCATCCCTGCTTGCTGCTTGT
AATCGTGGAAAGTCGGGAACCCTTTCTCGGAAGGGATTGAGTGGGATGACAGGCAGCTGA
TGGAGAGCAGTTCACGTCAGGCTGAAGTGCCTCAGGGCTACCCAGAGTTGTTGTTTTGCG
GGGTTGGTTGTTGTTTTGCTTTTTGATTTTTTTTTTTTTTCTTTGTCCACACACACATCA
GGCGGAAGTTCCCAGGCCAGGGATCAAACCTGCGCCGTGGCAGGCACCCAGGCCCTTGCA
GTGACAGTGCTGGATCCTTCACCTGCTGTGCCATAAAGGAACTCCTGCGTTGTTTAGTTT
TTAAGGATCCAGTCTAAAAATCCAGGCTAGTCCATTTGTTTAAGGAAACATTTTGTACAT
TGACCTCACACTGTATAATCTTTATTATCCTATTCTGATATGCCAAACAGCAAGTGTAAC
TACACCAAGTGCTGTAATTGTAGATACGAGAGGAACTATGGCCTTTGACTTCCTTCCAGT
GTGACAACAGCAGGTGTGAATTGTGATACATCTGAAGACTGGCCCTGCAGAGATGAGCTT
GCATCCAAAGTGTTTTTTGGTGACTCCATGAACTATTCATTAACCCTTTGTATCTTTGAC
GATTTCACCCCACCTTTACATCTGAAAGTTTGAAGAAATTACCTGAAACTAAAATAAAGA
TTTATATATATATAAAAAAAAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               2-617, gnl|bosTau2|chr25 (14562852-14562252)
               

               
               2-617, gnl|Hg17|chr16 (14669293-14670193)
               

               
               2-617, gnl|Mm7|chr16 (13248943-13249741)
               


               
               770-1163, gnl|bosTau2|chr25 (14562263-14561866)
               

               
               770-1163, gnl|Hg17|chr16 (14670185-14670590)
               

               
               770-1163, gnl|Mm7|chr16 (13249731-13250204)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-617, gnl|bosTau2|chr25 (14562852-14562252)
               

               
               2-617, gnl|Hg17|chr16 (14669293-14670193)
               

               
               2-617, gnl|Mm7|chr16 (13248943-13249741)
               


               
               770-1163, gnl|bosTau2|chr25 (14562263-14561866)
               

               
               770-1163, gnl|Hg17|chr16 (14670185-14670590)
               

               
               770-1163, gnl|Mm7|chr16 (13249731-13250204)

Expressed library(ies): 20 entry(ies)

More info

Expressed library(ies): 20 entry(ies)

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               cmu (0.55918)
               

               
               elu (0.385356)
               

               
               sin (0.349895)
               

               
               spc (0.340097)
               

               
               mgp (0.230681)
               

               
               eje (0.197668)
               

               
               sag (0.182715)
               

               
               nco (0.161734)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               ldo (0.0970026)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.55918)
               

               
               elu (0.385356)
               

               
               sin (0.349895)
               

               
               spc (0.340097)
               

               
               mgp (0.230681)
               

               
               eje (0.197668)
               

               
               sag (0.182715)
               

               
               nco (0.161734)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               ldo (0.0970026)

	2-617, gnl\|bosTau2\|chr25 (14562852-14562252)
	2-617, gnl\|Hg17\|chr16 (14669293-14670193)
	2-617, gnl\|Mm7\|chr16 (13248943-13249741)

	770-1163, gnl\|bosTau2\|chr25 (14562263-14561866)
	770-1163, gnl\|Hg17\|chr16 (14670185-14670590)
	770-1163, gnl\|Mm7\|chr16 (13249731-13250204)

	cmu (0.55918)
	elu (0.385356)
	sin (0.349895)
	spc (0.340097)
	mgp (0.230681)
	eje (0.197668)
	sag (0.182715)
	nco (0.161734)
	isp (0.150376)
	bfe (0.149858)
	liv (0.146284)
	spl (0.143184)
	nca (0.136874)
	ssp (0.13552)
	lyg (0.133103)
	bla (0.124347)
	eep (0.122564)
	cly (0.120642)
	ebs (0.118301)
	ldo (0.0970026)