Non-Coding RNA Search

Ss1.1-mAY1-MI-P-AY1-nrs-g-08-0-UI.s1.3

Sequence:


               
               CCTCCAACCAGTGGTTCTTGACCAAAATGCCGGGACTGCAGACCTTCCCCCAAGATTCAC
TTTAAATTGGTCTTAGGGTGTGGTCTCACCACTGATATTTTTAGAAGCTTCCAGTGTTTC
TAATATGCAGCCATTTGGCAAATACCAACTCTTTTTCTAGCCTCAGTTTCCCCATCTATA
AAATGAATGATTTAAATTATTCCAACCCCAACTTTTCATAACCTTTAACTCTCAATATAA
ATAAAGCATGCCGAGAGGGCCCTAAAACTAAGTGCCTAAATTTTATGCAATCATGCATCT
CAATGATGTAGAAAGGAATTTTGAACCATCATTTTTCTAAACATCATTGGATTGTTATAA
AAATAGGAACTTAAAAAAGAAACTGGGCATTTGGAACAGTTTTCCCTGATAAAAATCATT
TCCCTGGGTTTATTCTTTGTCTTCTTTTGAATGGCTCCTCTTCAGGAAATTTCACAAGAG
GCAAAAGAGTGCTGTTGGTTGGAGAATTTGGATTCAGGAGTCAGAATGCTGTCATTCATA
TCTAGGCTCTCAGCTCAGGAACTTTTCTGGGTCTCACTTCCCTCCTGTAAAATTGAGAAA
GAATACTATCGGCCTGATTTAGCTATTCTGCAACTTCCTGTTAGGAATCTCAAACATCAG
GAAGATCTGAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCCAACCAGTGGTTCTTGACCAAAATGCCGGGACTGCAGACCTTCCCCCAAGATTCAC
TTTAAATTGGTCTTAGGGTGTGGTCTCACCACTGATATTTTTAGAAGCTTCCAGTGTTTC
TAATATGCAGCCATTTGGCAAATACCAACTCTTTTTCTAGCCTCAGTTTCCCCATCTATA
AAATGAATGATTTAAATTATTCCAACCCCAACTTTTCATAACCTTTAACTCTCAATATAA
ATAAAGCATGCCGAGAGGGCCCTAAAACTAAGTGCCTAAATTTTATGCAATCATGCATCT
CAATGATGTAGAAAGGAATTTTGAACCATCATTTTTCTAAACATCATTGGATTGTTATAA
AAATAGGAACTTAAAAAAGAAACTGGGCATTTGGAACAGTTTTCCCTGATAAAAATCATT
TCCCTGGGTTTATTCTTTGTCTTCTTTTGAATGGCTCCTCTTCAGGAAATTTCACAAGAG
GCAAAAGAGTGCTGTTGGTTGGAGAATTTGGATTCAGGAGTCAGAATGCTGTCATTCATA
TCTAGGCTCTCAGCTCAGGAACTTTTCTGGGTCTCACTTCCCTCCTGTAAAATTGAGAAA
GAATACTATCGGCCTGATTTAGCTATTCTGCAACTTCCTGTTAGGAATCTCAAACATCAG
GAAGATCTGAGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               272-379, - strand, RNAz p=0.94527

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               272-379, - strand, RNAz p=0.94527

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               7-672, gnl|bosTau2|chr20 (37563639-37564323)
               

               
               7-672, gnl|Hg17|chr9 (76035276-76035998)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-672, gnl|bosTau2|chr20 (37563639-37564323)
               

               
               7-672, gnl|Hg17|chr9 (76035276-76035998)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               gul (0.177588)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)

	7-672, gnl\|bosTau2\|chr20 (37563639-37564323)
	7-672, gnl\|Hg17\|chr9 (76035276-76035998)