Non-Coding RNA Search

Ss1.1-mAY1-MI-P-AY1-nrt-e-01-0-UI.s1.3

Sequence:


               
               AAAATGCCTATCTCATTTTCCTCATTTCTGAAGAGAAGAGAAGTAAATGAAAGGAAGAAG
AAATAGATGTGCAATTAAAAGACACGGCAAAAAGATAGAGCAGACCCAGTGCAATCCAGC
CTTCAGGTGCAGGATGCTCGCCTTCCAAGGGAATGTGGAGTGGACTCAATTAGACACGAT
TGTCTTCATCCTGAAAGTAGTCAGCAGAGCCTAATTTCCCATATTTTAAAAGACATTCCA
TTTTGTTTCTTTCAACGGTGCCCTTTGAAAGGCACACAGTTGTCTTAGTTGTTCCACAAC
ACTGAGTGGGGAAAGAAGGATGGTGAACCCTTTACTCTTTTTTCAGGGCCGCGTTCTGTG
CTATTGGCAGATTTATAATGATATTGATCATAGCAATGATAAGTAATAATAACTGCCCTT
GTGTTAGTTAAAGGGAGCATTTTTAATCATTCCGAACCTTTTGTGACATGTAAAGTGCAG
TTGTGAGGAATGTGTGGGTGTACGAAAATGTATCTGTCAAGTTCAGAGTCTTCTAGATTA
AAAAAAATTATGACTTATCAATGGTGCCGTTTTAGCTGTGTCAGACAATGGGTGTGCACA
TGCTCACAATTATCCTTCAATGAATCTATGTTCAAATGCTTTAAAATTTTATCAGATGAT
ACAAGAGTATAACTTTGTCGCCTTTTAGAGTTTTTTTTCCCCCCTTCTATTTGCTTTCTT
ATTTTTTTCCTTCAAAAATCAATGAAGACTTGATTTCTGTCAATAATTGTATTAAGGGTG
AATATACTACCTGAATTTTGTGCATGTTACATTGTAGTTGTAACCTTTTCTAATTCAGGA
TGAATACGAGATGGTTGTGATTGTGCAGTGTATCAATAAAGTTCAAAGAAATTTGTAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAATGCCTATCTCATTTTCCTCATTTCTGAAGAGAAGAGAAGTAAATGAAAGGAAGAAG
AAATAGATGTGCAATTAAAAGACACGGCAAAAAGATAGAGCAGACCCAGTGCAATCCAGC
CTTCAGGTGCAGGATGCTCGCCTTCCAAGGGAATGTGGAGTGGACTCAATTAGACACGAT
TGTCTTCATCCTGAAAGTAGTCAGCAGAGCCTAATTTCCCATATTTTAAAAGACATTCCA
TTTTGTTTCTTTCAACGGTGCCCTTTGAAAGGCACACAGTTGTCTTAGTTGTTCCACAAC
ACTGAGTGGGGAAAGAAGGATGGTGAACCCTTTACTCTTTTTTCAGGGCCGCGTTCTGTG
CTATTGGCAGATTTATAATGATATTGATCATAGCAATGATAAGTAATAATAACTGCCCTT
GTGTTAGTTAAAGGGAGCATTTTTAATCATTCCGAACCTTTTGTGACATGTAAAGTGCAG
TTGTGAGGAATGTGTGGGTGTACGAAAATGTATCTGTCAAGTTCAGAGTCTTCTAGATTA
AAAAAAATTATGACTTATCAATGGTGCCGTTTTAGCTGTGTCAGACAATGGGTGTGCACA
TGCTCACAATTATCCTTCAATGAATCTATGTTCAAATGCTTTAAAATTTTATCAGATGAT
ACAAGAGTATAACTTTGTCGCCTTTTAGAGTTTTTTTTCCCCCCTTCTATTTGCTTTCTT
ATTTTTTTCCTTCAAAAATCAATGAAGACTTGATTTCTGTCAATAATTGTATTAAGGGTG
AATATACTACCTGAATTTTGTGCATGTTACATTGTAGTTGTAACCTTTTCTAATTCAGGA
TGAATACGAGATGGTTGTGATTGTGCAGTGTATCAATAAAGTTCAAAGAAATTTGTAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-114, - strand, RNAz p=0.557928
               

               
               235-348, - strand, RNAz p=0.97601
               

               
               724-898, + strand, RNAz p=0.973308

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-114, - strand, RNAz p=0.557928
               

               
               235-348, - strand, RNAz p=0.97601
               

               
               724-898, + strand, RNAz p=0.973308

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               828-921, + strand, RNAmicro p=0.961262

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               828-921, + strand, RNAmicro p=0.961262

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_002545, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_002545, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-898, gnl|bosTau2|chr29 (26819180-26818266)
               

               
               1-898, gnl|Hg17|chr11 (131790979-131790085)
               

               
               1-898, gnl|Mm7|chr9 (28807066-28807955)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-898, gnl|bosTau2|chr29 (26819180-26818266)
               

               
               1-898, gnl|Hg17|chr11 (131790979-131790085)
               

               
               1-898, gnl|Mm7|chr9 (28807066-28807955)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               fco (0.628832)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               ret (0.128733)
               

               
               eru (0.120048)
               

               
               spc (0.113366)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.628832)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               ret (0.128733)
               

               
               eru (0.120048)
               

               
               spc (0.113366)

	1-114, - strand, RNAz p=0.557928
	235-348, - strand, RNAz p=0.97601
	724-898, + strand, RNAz p=0.973308

	1-898, gnl\|bosTau2\|chr29 (26819180-26818266)
	1-898, gnl\|Hg17\|chr11 (131790979-131790085)
	1-898, gnl\|Mm7\|chr9 (28807066-28807955)

	fco (0.628832)
	fcc (0.197785)
	fbs (0.175346)
	ret (0.128733)
	eru (0.120048)
	spc (0.113366)