Non-Coding RNA Search

Ss1.1-mAY1-MI-P-AY1-nru-e-09-0-UI.s1.3

Sequence:


               
               AAAAAAAAAAAATTAACTGCTTATAACAAGCATTCTTCTTGTGGCATTTGGACAATATTT
TCCACCCTGAAATAATTTGTTTTACAAAGAATTTGATATCCTTTTAAAACTACTTAAGGT
GTCAGATAATTCACAGAATTCACTCCATGTCAGATCTCCTGAGAGGTCCCACCCCAGCAT
GGTGGCCTTTGCTTTGGACAAAATTAGTTTTTCATTTAAATCGGTATTTCCCAATATTTA
CTAAGTATTTTGCCAGAAAAATAACTTTCCTTTTTTTTTTAATTTTTTTTGGAAAACTCA
GAAGGGGGAAATCCATTACCCTGAAACATTTAGATGTTTACATTCTCCATGTTGATCTGT
TAAGGGATTAGTATTTTTTCCTTGTGATTGTGTTCTGAGACTGCATTAGAAAGTGTAGGG
ATTCATCTTCACAGCACGTCTTTAATCAAGCAGTTATGTCAACCAGCACATTCATTTTGT
TCGTATTCACTATAACATGCTATCTTGTAAATAAAGACATTCGGCACACTGTGAAAATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAAAAAATTAACTGCTTATAACAAGCATTCTTCTTGTGGCATTTGGACAATATTT
TCCACCCTGAAATAATTTGTTTTACAAAGAATTTGATATCCTTTTAAAACTACTTAAGGT
GTCAGATAATTCACAGAATTCACTCCATGTCAGATCTCCTGAGAGGTCCCACCCCAGCAT
GGTGGCCTTTGCTTTGGACAAAATTAGTTTTTCATTTAAATCGGTATTTCCCAATATTTA
CTAAGTATTTTGCCAGAAAAATAACTTTCCTTTTTTTTTTAATTTTTTTTGGAAAACTCA
GAAGGGGGAAATCCATTACCCTGAAACATTTAGATGTTTACATTCTCCATGTTGATCTGT
TAAGGGATTAGTATTTTTTCCTTGTGATTGTGTTCTGAGACTGCATTAGAAAGTGTAGGG
ATTCATCTTCACAGCACGTCTTTAATCAAGCAGTTATGTCAACCAGCACATTCATTTTGT
TCGTATTCACTATAACATGCTATCTTGTAAATAAAGACATTCGGCACACTGTGAAAATGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               422-540, - strand, RNAz p=0.828743

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               422-540, - strand, RNAz p=0.828743

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               13-540, gnl|bosTau2|chr4 (40144801-40145307)
               

               
               13-540, gnl|Hg17|chr7 (27010364-27009848)
               

               
               13-540, gnl|Mm7|chr6 (52221609-52221100)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-540, gnl|bosTau2|chr4 (40144801-40145307)
               

               
               13-540, gnl|Hg17|chr7 (27010364-27009848)
               

               
               13-540, gnl|Mm7|chr6 (52221609-52221100)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               rec (0.17307)
               

               
               bla (0.124347)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)
               

               
               bla (0.124347)

	13-540, gnl\|bosTau2\|chr4 (40144801-40145307)
	13-540, gnl\|Hg17\|chr7 (27010364-27009848)
	13-540, gnl\|Mm7\|chr6 (52221609-52221100)