Non-Coding RNA Search

Ss1.1-mAY1-MI-P-AY1-nrv-c-06-0-UI.s1.3

Sequence:


               
               AGCAGGGCCTGGTAGACGGCCTGTTCCTGGTCCGAGAGAGTCAGCGGAACCCACAGGGCT
TTGTCCTCTCTCTGTGCCACGTGCAGAAAGTCAAGCATTACCTTATCCTGCCAAGCGAGG
AGGAGGGTCGCCTTTACTTCAGCATGGACGACGGCCAGACTCGCTTCACCGACCTGCTGC
AGCTCGTGGAGTTCCACCAGCTGAACCGCGGCATCCTGCCCTGCTTGCTGCGCCACTGCT
GCACCCGTGTAGCCCTCTGAGCACCAGGCAGGCGGGCCCGCGCCTCAGCCACTCCAGGCC
ACACGCCGCCACCCCTCCGCATATAGGATGGACCCGGAGCATGAAGAAGGCAGGGACAGG
CTCACCGTGAAGACCCAGGACCTGGGTGTTCTCTGCTCCTTGCCTCTTTCAGGCCGAAGT
GCCCCCCGCCCCCAGCCCCTCGCCTCATCCACCCTCGCCTTCTCCTTAAGGGAGGGCCTT
GGGGTGGACCCCTCCCCTTCACGGAGCTCCCGGGCACCGCTTTGGGGTAGGGCATTATGG
GAGAGATGGGGGCAGCTCAGGTGGTCTTTAGGCCCCACACTTTGTACAGACCGAGAGGCC
AGTTGATCTTCTCTGTTTTATACTAGTGACAATAAAGATTATTTTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCAGGGCCTGGTAGACGGCCTGTTCCTGGTCCGAGAGAGTCAGCGGAACCCACAGGGCT
TTGTCCTCTCTCTGTGCCACGTGCAGAAAGTCAAGCATTACCTTATCCTGCCAAGCGAGG
AGGAGGGTCGCCTTTACTTCAGCATGGACGACGGCCAGACTCGCTTCACCGACCTGCTGC
AGCTCGTGGAGTTCCACCAGCTGAACCGCGGCATCCTGCCCTGCTTGCTGCGCCACTGCT
GCACCCGTGTAGCCCTCTGAGCACCAGGCAGGCGGGCCCGCGCCTCAGCCACTCCAGGCC
ACACGCCGCCACCCCTCCGCATATAGGATGGACCCGGAGCATGAAGAAGGCAGGGACAGG
CTCACCGTGAAGACCCAGGACCTGGGTGTTCTCTGCTCCTTGCCTCTTTCAGGCCGAAGT
GCCCCCCGCCCCCAGCCCCTCGCCTCATCCACCCTCGCCTTCTCCTTAAGGGAGGGCCTT
GGGGTGGACCCCTCCCCTTCACGGAGCTCCCGGGCACCGCTTTGGGGTAGGGCATTATGG
GAGAGATGGGGGCAGCTCAGGTGGTCTTTAGGCCCCACACTTTGTACAGACCGAGAGGCC
AGTTGATCTTCTCTGTTTTATACTAGTGACAATAAAGATTATTTTTTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34809625|pdb|1MW4|A

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34809625|pdb|1MW4|A

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               387-496, - strand, RNAz p=0.997731

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               387-496, - strand, RNAz p=0.997731

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               114-648, gnl|bosTau2|chr19 (32382450-32382983)
               

               
               114-648, gnl|Hg17|chr17 (35156530-35157059)
               

               
               114-648, gnl|Mm7|chr11 (98563898-98564407)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               114-648, gnl|bosTau2|chr19 (32382450-32382983)
               

               
               114-648, gnl|Hg17|chr17 (35156530-35157059)
               

               
               114-648, gnl|Mm7|chr11 (98563898-98564407)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mcp (0.170648)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)

	114-648, gnl\|bosTau2\|chr19 (32382450-32382983)
	114-648, gnl\|Hg17\|chr17 (35156530-35157059)
	114-648, gnl\|Mm7\|chr11 (98563898-98564407)