Non-Coding RNA Search

Ss1.1-mCP0-MI-P-CP0-nvh-c-02-0-UI.s2.3

Sequence:


               
               CACCCCTAGTGGCAGAACCCAGTGCCAAAGGGGCTGGGCTGGCAAAGCGAGCACTGTCAC
CTGCCTTTCACCTTCCTTCCAGGTAGTGGATCTCCTGAACCAGGCAGCACTGATCACCAA
TGATTCGAAGATCACAGTGCTCAAACAGGTCCAGGAACTGATCATTAACAAAGATCCCAC
ACTGCTGGACAACTTCTTGGACGAGATCATCGCTTTCCAAGCAGACAAGTCGATTGAAGT
GCGAAAATTTGTCATCGGCTTCATCGAGGAGGCATGGTATGGGGCATGGGGCGGCACAGG
GAGCCCCTGGAGGCACCCTGCTGGAGTCAGCTTCTTCGGCTTTTGGCCTGGCCCTGCCCT
GAGAGTGTTGCCCTCTGCTTCCCAGACCCATTCTTCCTCCCATGCACACTGACTCCCCAG
CAGATATTTAATAAGGTCGAAATCTTAAGAGTTATCCATGATTCCTCTGCGTCTTCTGCA
CTTCACATCTGCGTCATCAGTAAGGACTATCAGCTCTACCTTCAAGTTGTAAACAGCATC
TGACCATTGTTCGACCACTTCCCTTGCTATTGCTGTGGTCTAAGCCACTGTTCCCTCTTG
CCTAGGTGATTTCACTGGCCTTCTGTCTGGCTTACCTGCTTGCACTCTCTTTTTTGCTTA
ATTGAGTTGAAGTTCATATAACATAAAATTATTGTCTTTTTTTTGGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCCCTAGTGGCAGAACCCAGTGCCAAAGGGGCTGGGCTGGCAAAGCGAGCACTGTCAC
CTGCCTTTCACCTTCCTTCCAGGTAGTGGATCTCCTGAACCAGGCAGCACTGATCACCAA
TGATTCGAAGATCACAGTGCTCAAACAGGTCCAGGAACTGATCATTAACAAAGATCCCAC
ACTGCTGGACAACTTCTTGGACGAGATCATCGCTTTCCAAGCAGACAAGTCGATTGAAGT
GCGAAAATTTGTCATCGGCTTCATCGAGGAGGCATGGTATGGGGCATGGGGCGGCACAGG
GAGCCCCTGGAGGCACCCTGCTGGAGTCAGCTTCTTCGGCTTTTGGCCTGGCCCTGCCCT
GAGAGTGTTGCCCTCTGCTTCCCAGACCCATTCTTCCTCCCATGCACACTGACTCCCCAG
CAGATATTTAATAAGGTCGAAATCTTAAGAGTTATCCATGATTCCTCTGCGTCTTCTGCA
CTTCACATCTGCGTCATCAGTAAGGACTATCAGCTCTACCTTCAAGTTGTAAACAGCATC
TGACCATTGTTCGACCACTTCCCTTGCTATTGCTGTGGTCTAAGCCACTGTTCCCTCTTG
CCTAGGTGATTTCACTGGCCTTCTGTCTGGCTTACCTGCTTGCACTCTCTTTTTTGCTTA
ATTGAGTTGAAGTTCATATAACATAAAATTATTGTCTTTTTTTTGGCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47219222|emb|CAG11240.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47219222|emb|CAG11240.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               315-426, - strand, RNAz p=0.99954

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               315-426, - strand, RNAz p=0.99954

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               196-568, gnl|bosTau2|chr18 (38125738-38126094)
               

               
               196-568, gnl|Hg17|chr19 (51047490-51047122)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               196-568, gnl|bosTau2|chr18 (38125738-38126094)
               

               
               196-568, gnl|Hg17|chr19 (51047490-51047122)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	196-568, gnl\|bosTau2\|chr18 (38125738-38126094)
	196-568, gnl\|Hg17\|chr19 (51047490-51047122)