Ss1.1-mCP0-MI-P-CP0-nvh-f-08-0-UI.s1.3.5
|
GCTCTAAGGAAGATGGCATGGCAGGGTCAGTCCAAATGGCCAATGTGTTTCAATAGGCAT
CTCTCCCATGAAGTGGTTTCTGTGATACGAAATCTCTGTAGCGGTCAGAAAGCATTGCCA
CTTTCACCCATTATCGACTGTGCTGCTGACTACGAAGGCAGTAGATTCACTGGATCTTTT
ATGGAGACTGAAGACTGCTGCCAGTTCCCTCCCGGCTGGCATCTGTGTGACCTTAGGGTA
TTGGTGGAGCCTTCCCCTGGAGTGGGAGCTGCCAGCCTGTCATGGCGTCCTTAGGCCATT
TTCCTCATGTCCCCATTCAAGAGGGTTTTCCCCAATGTTGGAGAACCATGAGAAAAAAAA
AATGTAAAATCCTTGGGAAGATGGACAGGAAGGTAGGATGGTGATTCAAATGAGAGGAGA
AGGGGGCTGTTAGTTTGGAATTGGCCACCAAGCCCTTAGGTGGTGGTTCACCTTGGCTAC
GCATTAGCTTCACCTGGGGAGCTTAGGAAGCCTGCCTGCAGGCTATCCCAGGCTATCCCA
AGTGCACCAGGATGTCCAGAGGAGGGACCCAGGCATCAGTAGGTTTCAAAGCTCCCCAAG
TGATGCTCTCCCTGTGTAACCAAGTTTGGGCCATGTTGGGTGGCAAGGCAGTCTTGGAGG
CCAAGGCTTTGTAACCCAGAGCTTGCTTGTTTTGCCAGGGGTTTGTCACTAATTCAGCGT
GGGCTCCAGGCCAGTCTCAGTTCTGCCGAGGGATGAGATATTTTCTGTCAGGAACTCAAG
GACATAGGGCCTCCCGAAAGAGGCACTCTCACATAAGCTCCTTTCAAGTCAGCTGATCTT
TGGGGGAACTGAGTATAGTGGCTGGATGTTGGTGTTCTTCCTTGGAAGTTGCCTTGTCTC
TCAAGGATGGAGAGTAGTGCCACCTCTTTGAGGATACCCCTCTTCCCCTCGGTGTGTGTG
GGGGAGACCCTGCCCTTCCTTAAAGTTTTTGAGTCACAGGAGAAAGAGGCTTCTTCAAGA
CAGAGCAATGCAATACTTGTAACTTCTGTAAATAGCCCCATCTTTCAGAGTGACGTCATT
TCTACATTTGATATGCTTGTATTTCTGTAGGATGTATATAGTTTAGGGGATTTTGTTGTT
TGGTTTTGTTTTTTAGAAAAGTCAACATGTCTGTTTTTATTTATTGCTTGAAGAAAAAAA
ATCATTTGAAGAAAAATAAATACATTTTCAACCAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCTCTAAGGAAGATGGCATGGCAGGGTCAGTCCAAATGGCCAATGTGTTTCAATAGGCAT
CTCTCCCATGAAGTGGTTTCTGTGATACGAAATCTCTGTAGCGGTCAGAAAGCATTGCCA
CTTTCACCCATTATCGACTGTGCTGCTGACTACGAAGGCAGTAGATTCACTGGATCTTTT
ATGGAGACTGAAGACTGCTGCCAGTTCCCTCCCGGCTGGCATCTGTGTGACCTTAGGGTA
TTGGTGGAGCCTTCCCCTGGAGTGGGAGCTGCCAGCCTGTCATGGCGTCCTTAGGCCATT
TTCCTCATGTCCCCATTCAAGAGGGTTTTCCCCAATGTTGGAGAACCATGAGAAAAAAAA
AATGTAAAATCCTTGGGAAGATGGACAGGAAGGTAGGATGGTGATTCAAATGAGAGGAGA
AGGGGGCTGTTAGTTTGGAATTGGCCACCAAGCCCTTAGGTGGTGGTTCACCTTGGCTAC
GCATTAGCTTCACCTGGGGAGCTTAGGAAGCCTGCCTGCAGGCTATCCCAGGCTATCCCA
AGTGCACCAGGATGTCCAGAGGAGGGACCCAGGCATCAGTAGGTTTCAAAGCTCCCCAAG
TGATGCTCTCCCTGTGTAACCAAGTTTGGGCCATGTTGGGTGGCAAGGCAGTCTTGGAGG
CCAAGGCTTTGTAACCCAGAGCTTGCTTGTTTTGCCAGGGGTTTGTCACTAATTCAGCGT
GGGCTCCAGGCCAGTCTCAGTTCTGCCGAGGGATGAGATATTTTCTGTCAGGAACTCAAG
GACATAGGGCCTCCCGAAAGAGGCACTCTCACATAAGCTCCTTTCAAGTCAGCTGATCTT
TGGGGGAACTGAGTATAGTGGCTGGATGTTGGTGTTCTTCCTTGGAAGTTGCCTTGTCTC
TCAAGGATGGAGAGTAGTGCCACCTCTTTGAGGATACCCCTCTTCCCCTCGGTGTGTGTG
GGGGAGACCCTGCCCTTCCTTAAAGTTTTTGAGTCACAGGAGAAAGAGGCTTCTTCAAGA
CAGAGCAATGCAATACTTGTAACTTCTGTAAATAGCCCCATCTTTCAGAGTGACGTCATT
TCTACATTTGATATGCTTGTATTTCTGTAGGATGTATATAGTTTAGGGGATTTTGTTGTT
TGGTTTTGTTTTTTAGAAAAGTCAACATGTCTGTTTTTATTTATTGCTTGAAGAAAAAAA
ATCATTTGAAGAAAAATAAATACATTTTCAACCAAAAAAAAAAAAAAA
|
|
1-257, gnl|bosTau2|chr27 (17731915-17731680) |
|
1-257, gnl|canFam2|chr16 (37770984-37770346) |
|
1-257, gnl|dasNov1|scaffold_52976 (9797-9182) |
|
1-257, gnl|echTel1|scaffold_316133 (5873-5212) |
|
1-257, gnl|hg17|chr8 (29247205-29247866) |
|
1-257, gnl|Hg17|chr8 (29247767-29247497) |
|
1-257, gnl|loxAfr1|scaffold_3703 (61423-60767) |
|
1-257, gnl|mm7|chr8 (33582678-33582154) |
|
1-257, gnl|panTro1|chr7_random (20687410-20686749) |
|
1-257, gnl|rheMac2|chr8 (29494455-29495115) |
|
1-257, gnl|rn3|chr16 (61107154-61107683) |
| |
|
542-914, gnl|bosTau2|chr27 (17731388-17731012) |
|
542-914, gnl|Hg17|chr8 (29247176-29246795) |
|
542-914, gnl|Mm7|chr8 (33582705-33583040) |
| |
|
966-1234, gnl|bosTau2|chr27 (17730875-17730604) |
|
966-1234, gnl|Hg17|chr8 (29246762-29246500) |
|
966-1234, gnl|Mm7|chr8 (33583081-33583306) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-257, gnl|bosTau2|chr27 (17731915-17731680) |
|
1-257, gnl|canFam2|chr16 (37770984-37770346) |
|
1-257, gnl|dasNov1|scaffold_52976 (9797-9182) |
|
1-257, gnl|echTel1|scaffold_316133 (5873-5212) |
|
1-257, gnl|hg17|chr8 (29247205-29247866) |
|
1-257, gnl|Hg17|chr8 (29247767-29247497) |
|
1-257, gnl|loxAfr1|scaffold_3703 (61423-60767) |
|
1-257, gnl|mm7|chr8 (33582678-33582154) |
|
1-257, gnl|panTro1|chr7_random (20687410-20686749) |
|
1-257, gnl|rheMac2|chr8 (29494455-29495115) |
|
1-257, gnl|rn3|chr16 (61107154-61107683) |
| |
|
542-914, gnl|bosTau2|chr27 (17731388-17731012) |
|
542-914, gnl|Hg17|chr8 (29247176-29246795) |
|
542-914, gnl|Mm7|chr8 (33582705-33583040) |
| |
|
966-1234, gnl|bosTau2|chr27 (17730875-17730604) |
|
966-1234, gnl|Hg17|chr8 (29246762-29246500) |
|
966-1234, gnl|Mm7|chr8 (33583081-33583306) |
|
cje (0.330469) |
|
fce (0.271592) |
|
ece (0.229305) |
|
fcc (0.197785) |
|
mcp (0.170648) |
|
nco (0.161734) |
|
fco (0.157208) |
|
csk (0.140746) |
|
ecc (0.115035) |
|
cje (0.330469) |
|
fce (0.271592) |
|
ece (0.229305) |
|
fcc (0.197785) |
|
mcp (0.170648) |
|
nco (0.161734) |
|
fco (0.157208) |
|
csk (0.140746) |
|
ecc (0.115035) |
