Non-Coding RNA Search

Ss1.1-mCP0-MI-P-CP0-nvj-d-03-0-UI.s1.3

Sequence:


               
               CGAGGCCCAAAGCAAGATCAAGAGCCGTGGAGCACCGCCCCGGAGGTCCTCCATCCACAA
CGCGCACAGCATCCACCAGCGGTCGCGGAAGCGCATCAGCCAGGACGCCTATCGGCGCAA
TAGCGTTCGTTTTCTGCAGCAGCGCCAGCGTCAGCCGCGCTCGGGGCCTCAGAGAGCGGG
GAATCCATTGCAAAAGGAGCAGCCCAAGACCGAGCGCCCCAAGCCGCAACCAGCCGTGCC
CCCGAGGCCCAGCGCCGACCTCATCCTGCACCGCTGCAGCGAGAGCACCAAGCGGAAGCT
GGCATCCGCTGTCTGAGGCTGCGTGGTGCTCTCCCCACCTCCAGCCCCTCCCTGTATATA
CATGTATAGAGCGCCTGAGGTTTGGCAGCAGAGGGGAGACCCTGGCCCTACCCCATCTGG
CTATTCGCCCGTCCTGAATAAATGTTGCTTGGAGTGTAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAGGCCCAAAGCAAGATCAAGAGCCGTGGAGCACCGCCCCGGAGGTCCTCCATCCACAA
CGCGCACAGCATCCACCAGCGGTCGCGGAAGCGCATCAGCCAGGACGCCTATCGGCGCAA
TAGCGTTCGTTTTCTGCAGCAGCGCCAGCGTCAGCCGCGCTCGGGGCCTCAGAGAGCGGG
GAATCCATTGCAAAAGGAGCAGCCCAAGACCGAGCGCCCCAAGCCGCAACCAGCCGTGCC
CCCGAGGCCCAGCGCCGACCTCATCCTGCACCGCTGCAGCGAGAGCACCAAGCGGAAGCT
GGCATCCGCTGTCTGAGGCTGCGTGGTGCTCTCCCCACCTCCAGCCCCTCCCTGTATATA
CATGTATAGAGCGCCTGAGGTTTGGCAGCAGAGGGGAGACCCTGGCCCTACCCCATCTGG
CTATTCGCCCGTCCTGAATAAATGTTGCTTGGAGTGTAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|20664015|pdb|1K4U|P

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|20664015|pdb|1K4U|P

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

Help | Less info


               
               44-172, gnl|bosTau2|chr25 (30264887-30265012)
               

               
               44-172, gnl|canFam2|chr6 (8706207-8706104)
               

               
               44-172, gnl|danRer3|chr5 (67374238-67374340)
               

               
               44-172, gnl|echTel1|scaffold_252476 (2566-2440)
               

               
               44-172, gnl|fr1|chrUn (146926410-146926520)
               

               
               44-172, gnl|galGal2|chr19 (2414577-2414465)
               

               
               44-172, gnl|hg17|chr7 (72093858-72093983)
               

               
               44-172, gnl|Hg17|chr7 (74017854-74017726)
               

               
               44-172, gnl|loxAfr1|scaffold_86425 (4119-4246)
               

               
               44-172, gnl|mm7|chr5 (133471370-133471247)
               

               
               44-172, gnl|Mm7|chr5 (133471356-133471228)
               

               
               44-172, gnl|panTro1|chr6 (75394731-75394856)
               

               
               44-172, gnl|rheMac2|chr3 (52241998-52242123)
               

               
               44-172, gnl|rn3|chr12 (23448508-23448631)
               

               
               44-172, gnl|tetNig1|chr7 (10073792-10073901)
               


               
               195-454, gnl|bosTau2|chr25 (30265250-30265503)
               

               
               195-454, gnl|Hg17|chr7 (74017366-74017100)
               

               
               195-454, gnl|Mm7|chr5 (133471047-133470834)

Aligned organism(s): 18 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               44-172, gnl|bosTau2|chr25 (30264887-30265012)
               

               
               44-172, gnl|canFam2|chr6 (8706207-8706104)
               

               
               44-172, gnl|danRer3|chr5 (67374238-67374340)
               

               
               44-172, gnl|echTel1|scaffold_252476 (2566-2440)
               

               
               44-172, gnl|fr1|chrUn (146926410-146926520)
               

               
               44-172, gnl|galGal2|chr19 (2414577-2414465)
               

               
               44-172, gnl|hg17|chr7 (72093858-72093983)
               

               
               44-172, gnl|Hg17|chr7 (74017854-74017726)
               

               
               44-172, gnl|loxAfr1|scaffold_86425 (4119-4246)
               

               
               44-172, gnl|mm7|chr5 (133471370-133471247)
               

               
               44-172, gnl|Mm7|chr5 (133471356-133471228)
               

               
               44-172, gnl|panTro1|chr6 (75394731-75394856)
               

               
               44-172, gnl|rheMac2|chr3 (52241998-52242123)
               

               
               44-172, gnl|rn3|chr12 (23448508-23448631)
               

               
               44-172, gnl|tetNig1|chr7 (10073792-10073901)
               


               
               195-454, gnl|bosTau2|chr25 (30265250-30265503)
               

               
               195-454, gnl|Hg17|chr7 (74017366-74017100)
               

               
               195-454, gnl|Mm7|chr5 (133471047-133470834)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               nca (0.136874)
               

               
               nbm (0.0993246)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.136874)
               

               
               nbm (0.0993246)

	44-172, gnl\|bosTau2\|chr25 (30264887-30265012)
	44-172, gnl\|canFam2\|chr6 (8706207-8706104)
	44-172, gnl\|danRer3\|chr5 (67374238-67374340)
	44-172, gnl\|echTel1\|scaffold_252476 (2566-2440)
	44-172, gnl\|fr1\|chrUn (146926410-146926520)
	44-172, gnl\|galGal2\|chr19 (2414577-2414465)
	44-172, gnl\|hg17\|chr7 (72093858-72093983)
	44-172, gnl\|Hg17\|chr7 (74017854-74017726)
	44-172, gnl\|loxAfr1\|scaffold_86425 (4119-4246)
	44-172, gnl\|mm7\|chr5 (133471370-133471247)
	44-172, gnl\|Mm7\|chr5 (133471356-133471228)
	44-172, gnl\|panTro1\|chr6 (75394731-75394856)
	44-172, gnl\|rheMac2\|chr3 (52241998-52242123)
	44-172, gnl\|rn3\|chr12 (23448508-23448631)
	44-172, gnl\|tetNig1\|chr7 (10073792-10073901)

	195-454, gnl\|bosTau2\|chr25 (30265250-30265503)
	195-454, gnl\|Hg17\|chr7 (74017366-74017100)
	195-454, gnl\|Mm7\|chr5 (133471047-133470834)