Non-Coding RNA Search

Ss1.1-mCP0-MI-P-CP0-nvs-f-09-0-UI.s1.3

Sequence:


               
               TGCCCTCAACAGCCTTTCCAGGTTCAACTCTGCCTCTGTGTTCGGATCCTCCATGGACTC
CGTGGTCTCAAGAACCTGTCAGGAGAAGACAGACTTGAAGAATTATGCCTCCCCCAATGC
CAGCTGGTGTCCAGACATGCTGAGCCTCTACCATGATTTTCTGGAGAAGACCAAGGCCGA
TGGCTGGGTCAAACTGTTATCCTTCAAGTCCAACAGAGACCATATCCAGGGGTTCAAGAT
GCCATCAGGTCTCCAGGTTACCTCAGACAAAAGGGACTGGCGCCTCTTCACCAGGTGTAT
CGAAACAGAAGGACAAGGCTACGAGTATGTCATCTTCTTCCATCCATCCCAGAAGAAGTC
TGTCTGTCTTTCCCAACCAGGCCCCTACCTGGAAGGGCCCCCAGGGTTTGCCCATGGAGG
GTCCCTGGCACCCATGATAGACGAGACCTTTTCAAAAACTGCTTACCTGGCTGGAGAGGG
CCTGTTAACACTAAATCTCAACATCAGCTTCAAAAACTTGATCCCCGTGGACTCTCTAGC
TGTGCTGAATGTTGACGTGGAAAAGATTGAGAACCAGAAGATTTACATGTCCTGTATCAT
CCAGAGCCGAGACCAGCAGACACTTTACGCCAAAGCCTCAGGCATTTTCCTCCAGATGTC
ACTGGAAAAGGATTCATCTAAATAATAGCCCCTGTGCCTTCAGGAGAGCCTACTGCTGAC
TGCCTTGCCTACTGCTGACTGCCTTGCCTGGGACCCACCACCGAGCAGAGAGGAGTGACC
AGAAAATAACCAGTAAAGTGAGGGAGAGGGCACTTTCCTCTGCATAAATAAAGTCTCACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCCCTCAACAGCCTTTCCAGGTTCAACTCTGCCTCTGTGTTCGGATCCTCCATGGACTC
CGTGGTCTCAAGAACCTGTCAGGAGAAGACAGACTTGAAGAATTATGCCTCCCCCAATGC
CAGCTGGTGTCCAGACATGCTGAGCCTCTACCATGATTTTCTGGAGAAGACCAAGGCCGA
TGGCTGGGTCAAACTGTTATCCTTCAAGTCCAACAGAGACCATATCCAGGGGTTCAAGAT
GCCATCAGGTCTCCAGGTTACCTCAGACAAAAGGGACTGGCGCCTCTTCACCAGGTGTAT
CGAAACAGAAGGACAAGGCTACGAGTATGTCATCTTCTTCCATCCATCCCAGAAGAAGTC
TGTCTGTCTTTCCCAACCAGGCCCCTACCTGGAAGGGCCCCCAGGGTTTGCCCATGGAGG
GTCCCTGGCACCCATGATAGACGAGACCTTTTCAAAAACTGCTTACCTGGCTGGAGAGGG
CCTGTTAACACTAAATCTCAACATCAGCTTCAAAAACTTGATCCCCGTGGACTCTCTAGC
TGTGCTGAATGTTGACGTGGAAAAGATTGAGAACCAGAAGATTTACATGTCCTGTATCAT
CCAGAGCCGAGACCAGCAGACACTTTACGCCAAAGCCTCAGGCATTTTCCTCCAGATGTC
ACTGGAAAAGGATTCATCTAAATAATAGCCCCTGTGCCTTCAGGAGAGCCTACTGCTGAC
TGCCTTGCCTACTGCTGACTGCCTTGCCTGGGACCCACCACCGAGCAGAGAGGAGTGACC
AGAAAATAACCAGTAAAGTGAGGGAGAGGGCACTTTCCTCTGCATAAATAAAGTCTCACA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|21539589|ref|NP_079692.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21539589|ref|NP_079692.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               64-244, gnl|bosTau2|chr3 (14946564-14946744)
               

               
               64-244, gnl|Hg17|chr1 (148638009-148637829)
               

               
               64-244, gnl|Mm7|chr3 (94217202-94217382)
               


               
               261-407, gnl|bosTau2|chr3 (14947989-14948135)
               

               
               261-407, gnl|Hg17|chr1 (148636746-148636600)
               

               
               261-407, gnl|Mm7|chr3 (94218351-94218497)
               


               
               517-642, gnl|bosTau2|chr3 (14952873-14952998)
               

               
               517-642, gnl|Hg17|chr1 (148633411-148633286)
               

               
               517-642, gnl|Mm7|chr3 (94220496-94220621)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               64-244, gnl|bosTau2|chr3 (14946564-14946744)
               

               
               64-244, gnl|Hg17|chr1 (148638009-148637829)
               

               
               64-244, gnl|Mm7|chr3 (94217202-94217382)
               


               
               261-407, gnl|bosTau2|chr3 (14947989-14948135)
               

               
               261-407, gnl|Hg17|chr1 (148636746-148636600)
               

               
               261-407, gnl|Mm7|chr3 (94218351-94218497)
               


               
               517-642, gnl|bosTau2|chr3 (14952873-14952998)
               

               
               517-642, gnl|Hg17|chr1 (148633411-148633286)
               

               
               517-642, gnl|Mm7|chr3 (94220496-94220621)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ton (0.1755)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)

	64-244, gnl\|bosTau2\|chr3 (14946564-14946744)
	64-244, gnl\|Hg17\|chr1 (148638009-148637829)
	64-244, gnl\|Mm7\|chr3 (94217202-94217382)

	261-407, gnl\|bosTau2\|chr3 (14947989-14948135)
	261-407, gnl\|Hg17\|chr1 (148636746-148636600)
	261-407, gnl\|Mm7\|chr3 (94218351-94218497)

	517-642, gnl\|bosTau2\|chr3 (14952873-14952998)
	517-642, gnl\|Hg17\|chr1 (148633411-148633286)
	517-642, gnl\|Mm7\|chr3 (94220496-94220621)